View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15975_low_4 (Length: 322)
Name: NF15975_low_4
Description: NF15975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15975_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 162 - 310
Target Start/End: Complemental strand, 7879589 - 7879441
Alignment:
| Q |
162 |
tttattcattgaataaagtctagcgttacgactttaagttgtaattgtatcaccatttaggatcattgggtgatttaatattgatgtttcttcttatcta |
261 |
Q |
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| T |
7879589 |
tttattcattgaataaagtctagtgttaagactataagttgcaattgtagcactatttaggatcgttgggtgatttaatattgatgtgtcttctgatcta |
7879490 |
T |
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| Q |
262 |
aagtcttataaattcatgaattcatgtgtaactcattaattttaaatta |
310 |
Q |
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| T |
7879489 |
acgtcttataaattcatgaattcatgtgtaactcattaattttaaatta |
7879441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 7909171 - 7909101
Alignment:
| Q |
39 |
attgtgcaagtcacagtttctctaaaacatgtgcataaagctttcccacagtgctaagacttcaagttgtgtta |
112 |
Q |
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| T |
7909171 |
attgtgcaagtcatagtttctctaaaacatgt--ataaagctttcc-acagtgctaagacttcaagttgtgtta |
7909101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 50674987 - 50674911
Alignment:
| Q |
203 |
taattgtatcaccatttaggatcattgggtgatttaatattgatgtttcttcttatctaaagtcttataaattcatg |
279 |
Q |
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| T |
50674987 |
taattgtagcactatataggatcatggggtgattgagttttgatgtttctactggtctgaagtcttataaattcatg |
50674911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 277
Target Start/End: Complemental strand, 50670132 - 50670089
Alignment:
| Q |
234 |
atttaatattgatgtttcttcttatctaaagtcttataaattca |
277 |
Q |
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| T |
50670132 |
atttaatgttgatgtttctactgatctaaagtcttataaattca |
50670089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 279
Target Start/End: Complemental strand, 48885113 - 48885020
Alignment:
| Q |
186 |
gttacgactttaagttgtaattgtatcaccatttaggatcattgggtgatttaatattgatgtttcttcttatctaaagtcttataaattcatg |
279 |
Q |
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| T |
48885113 |
gttaagactttaagttataactgcagcactatttaggatcattgggtgatttaattttgatgtttcttctgacctcaaatcttataaattcatg |
48885020 |
T |
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