View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15976_high_12 (Length: 439)
Name: NF15976_high_12
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Original strand, 20079102 - 20079509
Alignment:
| Q |
15 |
atgaacatggcaacaatggctacgaagagagaacttaacccaaaaagaagtttcaatggcaagtttctattgaagtcttcgacctgttttcgagaagtaa |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
20079102 |
atgaacatggcaacaatggctacgaagagagaacttaacccaaaaagaagtttcaatggcaagtttctattgaagtcttcgacttgttttcgagaagtga |
20079201 |
T |
|
| Q |
115 |
gtatagaaaggaacatgattagtgcagtgaccgagaagtaaagtccaaataatgaacatatagagaatacttcaaatgcaggttgtccttcgaaattcgg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| || |
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| T |
20079202 |
gtatagaaaggaacatgattagtgcagtgaccgagaagtaaagtccaattaatgaacatatcgagaatacttcaaatgcaggctgtccttcgaaatttgg |
20079301 |
T |
|
| Q |
215 |
tttccctgattggtcattgcctccagggacactgcctgatgtagcaaaggagacgcctgcgacgagtgctgctacaactgaacatgactctgatgtgtct |
314 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20079302 |
tttccctgattggtcattgcctccagggacactgcctgatgtagcaaaggagacgcctgcgacgagtgctgctacaactgagcatgactctgatgtgtct |
20079401 |
T |
|
| Q |
315 |
ttcaaccactcaatgctgctttgtagaagttctttgtgttcctccttaaagatttcacctggggnnnnnnnnnnnnngttgcttctatgatggtaatggt |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20079402 |
ttcaaccactcaatgctgctttgtagaagttctttgtgttcctccttaaagatttcacctggggtttttccttctttgttgcttctatgatggtaatggt |
20079501 |
T |
|
| Q |
415 |
ctggtact |
422 |
Q |
| |
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|||||||| |
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| T |
20079502 |
ctggtact |
20079509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 422
Target Start/End: Original strand, 20103419 - 20103826
Alignment:
| Q |
15 |
atgaacatggcaacaatggctacgaagagagaacttaacccaaaaagaagtttcaatggcaagtttctattgaagtcttcgacctgttttcgagaagtaa |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
20103419 |
atgaacatggcaacaatggctacgaagagagaactaaacccaaaaagaagtttcaatggcaagtttctattgaagtcttcgacttgttttcgagaagtga |
20103518 |
T |
|
| Q |
115 |
gtatagaaaggaacatgattagtgcagtgaccgagaagtaaagtccaaataatgaacatatagagaatacttcaaatgcaggttgtccttcgaaattcgg |
214 |
Q |
| |
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||| || |||||||||||| ||||||||| | |||||||||||||||| ||| ||| |||||||||||||||| |||||||| ||||||||||| | || |
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| T |
20103519 |
gtaaagcaaggaacatgatgagtgcagtggcagagaagtaaagtccaattaacgaagatatagagaatacttcgaatgcaggctgtccttcgaatgttgg |
20103618 |
T |
|
| Q |
215 |
tttccctgattggtcattgcctccagggacactgcctgatgtagcaaaggagacgcctgcgacgagtgctgctacaactgaacatgactctgatgtgtct |
314 |
Q |
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||| || | | | ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||| |
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| T |
20103619 |
ttttccagtattctgattacctccggggacgctgcctgatgtagcaaaggagacgcctgcgacgagtgccgctacaactgagcatgactgtgatgtgtct |
20103718 |
T |
|
| Q |
315 |
ttcaaccactcaatgctgctttgtagaagttctttgtgttcctccttaaagatttcacctggggnnnnnnnnnnnnngttgcttctatgatggtaatggt |
414 |
Q |
| |
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||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20103719 |
ttcaaccactcaatgcttttatctagaagttctttgtgttcctccttaaagatttcacctggggtttttctatcgttgttgcttctatgatggtaatggt |
20103818 |
T |
|
| Q |
415 |
ctggtact |
422 |
Q |
| |
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|||||||| |
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|
| T |
20103819 |
ctggtact |
20103826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 99 - 378
Target Start/End: Complemental strand, 19903879 - 19903600
Alignment:
| Q |
99 |
tgttttcgagaagtaagtatagaaaggaacatgattagtgcagtgaccgagaagtaaagtccaaataatgaacatatagagaatacttcaaatgcaggtt |
198 |
Q |
| |
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||||||| | |||| |||||||||||||| | || |||| |||||| ||||||||||||||| |||||||||| ||||||||| ||||||||||||| |
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| T |
19903879 |
tgttttctacaagtgagtatagaaaggaataccatgagtgaagtgacagagaagtaaagtccagttaatgaacatgtagagaataaatcaaatgcaggtt |
19903780 |
T |
|
| Q |
199 |
gtccttcgaaattcggtttccctgattggtcattgcctccagggacactgcctgatgtagcaaaggagacgcctgcgacgagtgctgctacaactgaaca |
298 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||| | |
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| T |
19903779 |
gtccttttaaatttggtttccctgattggtcattgcctccagggacagtgcatgatgtagcaaaggagacgcctgcgacgagtgctgccacaattgagct |
19903680 |
T |
|
| Q |
299 |
tgactctgatgtgtctttcaaccactcaatgctgctttgtagaagttctttgtgttcctccttaaagatttcacctgggg |
378 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
19903679 |
tgactctgttgtgtttttcaaccactcaatgctgctttgtagaagttgtttgttttcctccttaaagatttcacctgggg |
19903600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 20130642 - 20130988
Alignment:
| Q |
18 |
aacatggcaacaatggctacgaagagagaacttaacccaaaaagaagtttcaatggcaagtttctattgaagtcttcgacctgttttcgagaagtaagta |
117 |
Q |
| |
|
|||| ||| ||||||| |||||||| |||| ||| |||| |||||| || | |||||||||||||| || |||||||| ||||||||| | | |||| |
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| T |
20130642 |
aacacggcgacaatggatacgaagacagaagttaggccaataagaagcttaagtggcaagtttctatcaaaatcttcgacttgttttcgatcaatgagta |
20130741 |
T |
|
| Q |
118 |
tagaaaggaacatgattagtgcagtgaccgagaagtaaagtccaaataatgaacatatagagaatacttcaaatgcaggttgtccttcgaaattcggttt |
217 |
Q |
| |
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|||||||||||| ||| ||||||||||| || ||||||| ||||| ||||||| |||| | |||| |||| ||||||| ||| |||| | | ||| |
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| T |
20130742 |
tagaaaggaacaagatgagtgcagtgacagaaaagtaaactccaattaatgaagatattgcgaatccttctaatgcagtatgttcttctgatgatgattt |
20130841 |
T |
|
| Q |
218 |
ccctgattggtcattgcctccagggacactgcctgatgtagcaaaggagacgcctgcgacgagtgctgctacaactgaacatgactctgatgtgtctttc |
317 |
Q |
| |
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||||| || | ||||||||| |||||||||| | |||| || ||||||| ||| || |||| |||||||||| |||| ||||| | || ||| ||| | |
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| T |
20130842 |
ccctgtttccttattgcctccggggacactgcttaatgttgcgaaggagatgccggcaacgattgctgctacagctgagcatgattgtgttgtttctatt |
20130941 |
T |
|
| Q |
318 |
aaccactcaatgctgctttgtagaagttctttgtgttcctccttaaa |
364 |
Q |
| |
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||||||| | |||| ||||||||||||||||| ||| ||||||||| |
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|
| T |
20130942 |
aaccactgagtgctattttgtagaagttctttgcgtttctccttaaa |
20130988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 36893504 - 36893470
Alignment:
| Q |
42 |
agagaacttaacccaaaaagaagtttcaatggcaa |
76 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
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|
| T |
36893504 |
agagaacttaacccaagaagaagtttcaatggcaa |
36893470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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