View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15976_high_15 (Length: 400)

Name: NF15976_high_15
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15976_high_15
NF15976_high_15
[»] chr1 (6 HSPs)
chr1 (18-295)||(16875243-16875520)
chr1 (18-72)||(16881724-16881778)
chr1 (351-386)||(28519446-28519481)
chr1 (354-386)||(38991270-38991302)
chr1 (355-386)||(28512981-28513012)
chr1 (355-386)||(38985083-38985114)
[»] chr8 (5 HSPs)
chr8 (351-386)||(37209885-37209920)
chr8 (352-386)||(21247847-21247881)
chr8 (354-386)||(27683362-27683394)
chr8 (355-386)||(21241343-21241374)
chr8 (355-386)||(37204408-37204439)
[»] chr4 (4 HSPs)
chr4 (353-386)||(42411278-42411311)
chr4 (354-386)||(12435302-12435334)
chr4 (355-386)||(917244-917275)
chr4 (355-386)||(42404814-42404845)
[»] chr7 (2 HSPs)
chr7 (355-386)||(22822710-22822741)
chr7 (355-386)||(22827013-22827044)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 16875243 - 16875520
Alignment:
Q  18 cgagctttatttattgcaattgaatttatatattaataaaaccatgttcttgccaacatagtattgaaaaagttggtaacgcaggtttttcctacaaaaa 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||    
T  16875243 cgagctttatttattgcaactgaatttatatattaataaaaccatgttcttgccaacatggtattgaaaaagttggtaacacaagtttttcctacaaaaa 16875342  T
Q  118 agaaactaaatttgattcttgaaattgcattgtttgagaggcaatccagccccatnnnnnnntgggtgtcatgttgtgggttcaggaattactctcatag 217  Q
    ||||||| ||||||||||   ||||||||||||||||||||||||||||||||||       ||| |||||||||||||||||| |||||||||||||||    
T  16875343 agaaactgaatttgattcagaaaattgcattgtttgagaggcaatccagccccataaaaaaatggatgtcatgttgtgggttcaagaattactctcatag 16875442  T
Q  218 catgccaaattggcttataccatggggataccctatgatgccttctgagggggtcaaaaactatggtgtgttagactg 295  Q
    ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  16875443 cataccaaattggcttataccatggggataccctatgatgcctactgagggggtcaaaaactatggtgggttagactg 16875520  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 16881724 - 16881778
Alignment:
Q  18 cgagctttatttattgcaattgaatttatatattaataaaaccatgttcttgcca 72  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||| |||||    
T  16881724 cgagctttatttattgcaactgaatttatatattaatataaccatgttcatgcca 16881778  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 386
Target Start/End: Complemental strand, 28519481 - 28519446
Alignment:
Q  351 tttttgttatgaatataagtaaatagagacagtaat 386  Q
    ||||||||||||||||||||||||||||||||||||    
T  28519481 tttttgttatgaatataagtaaatagagacagtaat 28519446  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 38991302 - 38991270
Alignment:
Q  354 ttgttatgaatataagtaaatagagacagtaat 386  Q
    |||||||||||||||||||||||||||||||||    
T  38991302 ttgttatgaatataagtaaatagagacagtaat 38991270  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 386
Target Start/End: Complemental strand, 28513012 - 28512981
Alignment:
Q  355 tgttatgaatataagtaaatagagacagtaat 386  Q
    ||||||||||||||||||||||||||||||||    
T  28513012 tgttatgaatataagtaaatagagacagtaat 28512981  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 386
Target Start/End: Complemental strand, 38985114 - 38985083
Alignment:
Q  355 tgttatgaatataagtaaatagagacagtaat 386  Q
    ||||||||||||||||||||||||||||||||    
T  38985114 tgttatgaatataagtaaatagagacagtaat 38985083  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 386
Target Start/End: Complemental strand, 37209920 - 37209885
Alignment:
Q  351 tttttgttatgaatataagtaaatagagacagtaat 386  Q
    ||||||||||||||||||||||||||||||||||||    
T  37209920 tttttgttatgaatataagtaaatagagacagtaat 37209885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 352 - 386
Target Start/End: Complemental strand, 21247881 - 21247847
Alignment:
Q  352 ttttgttatgaatataagtaaatagagacagtaat 386  Q
    |||||||||||||||||||||||||||||||||||    
T  21247881 ttttgttatgaatataagtaaatagagacagtaat 21247847  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 27683362 - 27683394
Alignment:
Q  354 ttgttatgaatataagtaaatagagacagtaat 386  Q
    |||||||||||||||||||||||||||||||||    
T  27683362 ttgttatgaatataagtaaatagagacagtaat 27683394  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 386
Target Start/End: Complemental strand, 21241374 - 21241343
Alignment:
Q  355 tgttatgaatataagtaaatagagacagtaat 386  Q
    ||||||||||||||||||||||||||||||||    
T  21241374 tgttatgaatataagtaaatagagacagtaat 21241343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 386
Target Start/End: Complemental strand, 37204439 - 37204408
Alignment:
Q  355 tgttatgaatataagtaaatagagacagtaat 386  Q
    ||||||||||||||||||||||||||||||||    
T  37204439 tgttatgaatataagtaaatagagacagtaat 37204408  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 386
Target Start/End: Complemental strand, 42411311 - 42411278
Alignment:
Q  353 tttgttatgaatataagtaaatagagacagtaat 386  Q
    ||||||||||||||||||||||||||||||||||    
T  42411311 tttgttatgaatataagtaaatagagacagtaat 42411278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 12435302 - 12435334
Alignment:
Q  354 ttgttatgaatataagtaaatagagacagtaat 386  Q
    |||||||||||||||||||||||||||||||||    
T  12435302 ttgttatgaatataagtaaatagagacagtaat 12435334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 386
Target Start/End: Original strand, 917244 - 917275
Alignment:
Q  355 tgttatgaatataagtaaatagagacagtaat 386  Q
    ||||||||||||||||||||||||||||||||    
T  917244 tgttatgaatataagtaaatagagacagtaat 917275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 386
Target Start/End: Complemental strand, 42404845 - 42404814
Alignment:
Q  355 tgttatgaatataagtaaatagagacagtaat 386  Q
    ||||||||||||||||||||||||||||||||    
T  42404845 tgttatgaatataagtaaatagagacagtaat 42404814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 386
Target Start/End: Complemental strand, 22822741 - 22822710
Alignment:
Q  355 tgttatgaatataagtaaatagagacagtaat 386  Q
    ||||||||||||||||||||||||||||||||    
T  22822741 tgttatgaatataagtaaatagagacagtaat 22822710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 386
Target Start/End: Complemental strand, 22827044 - 22827013
Alignment:
Q  355 tgttatgaatataagtaaatagagacagtaat 386  Q
    ||||||||||||||||||||||||||||||||    
T  22827044 tgttatgaatataagtaaatagagacagtaat 22827013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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