View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15976_high_30 (Length: 270)
Name: NF15976_high_30
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 37 - 257
Target Start/End: Complemental strand, 30728054 - 30727829
Alignment:
| Q |
37 |
aagtgtcctgattcaacccctcnnnnnnntgtatattgattcataatgcatgaatctgtaattgattcctgatatgaaaaaactccnnnnnnnnnnnnnn |
136 |
Q |
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| T |
30728054 |
aagtgtcctgattcaacccctcaaaaaaaagtatattgattcataattcatgaatctgtaattgattcttgatatgaaaaaactcttttttttttttttt |
30727955 |
T |
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| Q |
137 |
n----aagaagctagattcaaaatacaaattgtaaaaaa-gtatatgatcattttcaacgagagtgtcttaaacttttaagacttggtatttattaggta |
231 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30727954 |
tttttaagaagctagattcaaaataaaaattgtaaaaaaagtatatggccattttcaatgagagtgtcttaaacttttaagacttggtatttattaggta |
30727855 |
T |
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| Q |
232 |
attttattggggagaaaagttgttca |
257 |
Q |
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||| |||||||||||||||||||||| |
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| T |
30727854 |
attctattggggagaaaagttgttca |
30727829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 7733085 - 7733196
Alignment:
| Q |
2 |
aatgaaatatgataagataaaaaattattgtattcaagtgtcctgattcaacccctcnnnnnnntgtatattgattcataatgcatgaatctgtaattga |
101 |
Q |
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| T |
7733085 |
aatgaaatatgataagata-----ttattgtattcaagtgtgctgattcaacccctaaaaaaaa-gtatattgattcataat-catgaatttgtaattga |
7733177 |
T |
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| Q |
102 |
ttcctgatatgaaaaaact |
120 |
Q |
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||| |||||||||| |||| |
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| T |
7733178 |
ttcttgatatgaaacaact |
7733196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 31330280 - 31330313
Alignment:
| Q |
197 |
gtcttaaacttttaagacttggtatttattaggt |
230 |
Q |
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| T |
31330280 |
gtcttaaacttttaagacttggtatctattaggt |
31330313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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