View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15976_high_8 (Length: 513)
Name: NF15976_high_8
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 69 - 439
Target Start/End: Original strand, 19330746 - 19331116
Alignment:
| Q |
69 |
tctcccaaattaattattaatattattaaatcaaaccatcatataagtgcttggtttcactcatcaaggttaagaatatggctatgatggagtgtgatgt |
168 |
Q |
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| T |
19330746 |
tctcccaaattaattattaatattattaaatcaaaccatcatataagtgcttgatttcactcatcaaggtaaagaatatggctatgatggagtgtgatgt |
19330845 |
T |
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| Q |
169 |
agaggacaataatttcattgagtggctcaaaccatctaattcctctaaatcatatctaacttcatattcatcatcatcttcttcaaccactcaaaatgaa |
268 |
Q |
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| T |
19330846 |
agaggacaataatttcattgagtggctcaaaccatctaattcctctaaatcatatctaacttcatcatcatcatcatcttcttctaccactcaaaatgaa |
19330945 |
T |
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| Q |
269 |
actattcaattctttcctattttgagtgcaaatttttcaaaagatgaagaacgtgaagtgccacaaattgagggttttgagttcaaagaagaaaaagaga |
368 |
Q |
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| T |
19330946 |
actattcaattctttcctattttgagtgcaaatttttcaaaagatgaagaacgtgaagtgccacaaattgagggttttgagttcaaagaagaaaaagaga |
19331045 |
T |
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| Q |
369 |
ttgtggctttgcatattggattacctcatgacactaaaaaatatcttgatgatgagaagaaggttttccat |
439 |
Q |
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| T |
19331046 |
ttgtggctttgcatattggattacctcatgacactaaaaaatatcttgatgatgagaagaagtttttccat |
19331116 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 36262782 - 36262750
Alignment:
| Q |
181 |
tttcattgagtggctcaaaccatctaattcctc |
213 |
Q |
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| T |
36262782 |
tttcattgaatggctcaaaccatctaattcctc |
36262750 |
T |
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