View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15976_low_1 (Length: 805)

Name: NF15976_low_1
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15976_low_1
NF15976_low_1
[»] chr1 (5 HSPs)
chr1 (326-796)||(1390281-1390725)
chr1 (18-122)||(1390027-1390131)
chr1 (163-258)||(1390128-1390223)
chr1 (438-534)||(21859717-21859813)
chr1 (438-533)||(22916284-22916379)
[»] chr6 (3 HSPs)
chr6 (438-601)||(33596362-33596524)
chr6 (438-534)||(14958902-14958998)
chr6 (437-535)||(8877825-8877922)
[»] chr7 (1 HSPs)
chr7 (438-534)||(48629425-48629521)
[»] scaffold0186 (1 HSPs)
scaffold0186 (437-535)||(2723-2821)
[»] chr4 (3 HSPs)
chr4 (447-533)||(4103226-4103312)
chr4 (707-771)||(52477314-52477378)
chr4 (697-759)||(2302234-2302296)
[»] chr2 (3 HSPs)
chr2 (49-122)||(4747667-4747740)
chr2 (438-517)||(27513752-27513831)
chr2 (55-97)||(4709644-4709686)
[»] chr3 (2 HSPs)
chr3 (437-533)||(27437912-27438010)
chr3 (437-535)||(9775128-9775225)
[»] chr8 (2 HSPs)
chr8 (438-517)||(15327849-15327928)
chr8 (438-517)||(15508218-15508297)
[»] scaffold0131 (1 HSPs)
scaffold0131 (460-529)||(10296-10365)
[»] scaffold0003 (1 HSPs)
scaffold0003 (441-529)||(111003-111091)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 326 - 796
Target Start/End: Original strand, 1390281 - 1390725
Alignment:
Q  326 gtaaatatgcatttagagagaccaaatgcaatacctttaccaaaaccaaactcaaagggtgcaactgagaaggggcagccttcagatgattcaacacctt 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390281 gtaaatatgcatttagagagaccaaatgcaatacctttaccaaaaccaaactcaaagggtgcaactgagaaggggcagccttcagatgattcaacacctt 1390380  T
Q  426 tatctcaaaactcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttg 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||                   
T  1390381 tatctcaaaactcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaacttataactgcctcaaaatgcacat--------------- 1390465  T
Q  526 cgactgtttggagcaattgtcgcaacttttctttgttaaatgaattaaaaggcgcgttccaatttcatttacgctctctacccaaaatttcatttccccg 625  Q
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  1390466 -------ttggagcaactgtcgcagcttttctttgttaaatgaattaaaaggcgcgttgcaatttcatttacgctctctatccaaaatttcatttccccg 1390558  T
Q  626 ctttcttactttcccccaaaaaccccccaaatctcaaactcaaacttcacaaactcacccaccacactccatcctcactcgttcctcttcctcgttatgc 725  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390559 ctttcttactttcccccaaaa-ccccccaaatctcaaactcaaacttcacaaactcacccaccacactccatcctcactcgttcctcttcctcgttatgc 1390657  T
Q  726 cttcacacacactcgctctcacactcccaacctaacctacacactcttcttgattcagattcttctcactc 796  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  1390658 cttcacacacactcgctctcacactcccaacctaacctacacac---tcttgattcagattcttctcactc 1390725  T

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Target: chr1; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 1390027 - 1390131
Alignment:
Q  18 aaagatgaactatcaagtaagagaaaaagaagggcaaattgaagtaaaaagggagcctatgccatatacaatgcaatctacattatatagttattctaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390027 aaagatgaactatcaagtaagagaaaaagaagggcaaattgaagtaaaaagggagcctatgccatatacaatgcaatctacattatatagttattctaat 1390126  T
Q  118 acagc 122  Q
    |||||    
T  1390127 acagc 1390131  T

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Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 1390128 - 1390223
Alignment:
Q  163 cagctgacttctctatgttcaaatttacgaacagtttatcaaagtgtctatcttctgtagagttatcacaaaatgaagatgaagaagtactagagg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390128 cagctgacttctctatgttcaaatttacgaacagtttatcaaagtgtctatcttctgtagagttatcacaaaatgaagatgaagaagtactagagg 1390223  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 438 - 534
Target Start/End: Complemental strand, 21859813 - 21859717
Alignment:
Q  438 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgttt 534  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||| |||| || ||||||||||||||  |||||||| ||||||||| ||||||    
T  21859813 cactacaagaaaaactgcattttgcgacacttcatctgcgaaccttaacttacaactgcctcaaaatgcatttttgcaacagttgttgcggctgttt 21859717  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 438 - 533
Target Start/End: Original strand, 22916284 - 22916379
Alignment:
Q  438 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtt 533  Q
    ||||||||||||| |  ||| ||||||||| ||||| ||||||| |||||||||| || |||||| ||||  |||| |||||||||||||||||||    
T  22916284 cactacaagaaaatcatcaatttgcgacacctcatcagcgacccctaccttataactgtctcaaagtgcatttttgaaacggttgttgcgactgtt 22916379  T

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Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 438 - 601
Target Start/End: Complemental strand, 33596524 - 33596362
Alignment:
Q  438 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtttgga 537  Q
    ||||||||||||| | |||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||| |||||||||     
T  33596524 cactacaagaaaatcagcaaattgtgacacttcatctgcgacccctaccttataactgcctcaaaatgaacatttgcaacggttgttgcaactgtttggg 33596425  T
Q  538 gcaattgtcgcaacttttctttgttaaatgaattaaaaggcgcgttccaatttcatttacgctc 601  Q
     ||| |||||||| ||||||||||| ||||| ||||||||||| ||  ||||||||||||||||    
T  33596424 tcaactgtcgcaagttttctttgtt-aatgacttaaaaggcgctttgtaatttcatttacgctc 33596362  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 438 - 534
Target Start/End: Original strand, 14958902 - 14958998
Alignment:
Q  438 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgttt 534  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| |||| || ||||||||||||||  |||||||||||||||||| ||||||    
T  14958902 cactacaagaaaaactgcattttgcgacacttcatctgcgacccttaacttacaactgcctcaaaatgcatttttgcaacggttgttgcggctgttt 14958998  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 437 - 535
Target Start/End: Original strand, 8877825 - 8877922
Alignment:
Q  437 tcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtttg 535  Q
    ||||||||||||||   | |||||||||||||||||||||||||| | ||||  || |||||| |||||||  |||||||| ||||||||| |||||||    
T  8877825 tcactacaagaaaataaggaaattgcgacacttcatctgcgacccatgccttgcaactgcctc-aaatgcatttttgcaacagttgttgcggctgtttg 8877922  T

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Target: chr7 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 438 - 534
Target Start/End: Original strand, 48629425 - 48629521
Alignment:
Q  438 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgttt 534  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| |||| || ||||||||||||||  |||||||| ||||||||| ||||||    
T  48629425 cactacaagaaaaactgcattttgcgacacttcatctgcgacccttaacttacaactgcctcaaaatgcatttttgcaacagttgttgcggctgttt 48629521  T

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Target: scaffold0186 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 437 - 535
Target Start/End: Complemental strand, 2821 - 2723
Alignment:
Q  437 tcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtttg 535  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| |||| ||  |||||||||||||  |||||||| ||||||||| |||||||    
T  2821 tcactacaagaaaaactgcattttgcgacacttcatctgcgacccttaacttacaaccgcctcaaaatgcatttttgcaacagttgttgcggctgtttg 2723  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 447 - 533
Target Start/End: Original strand, 4103226 - 4103312
Alignment:
Q  447 aaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtt 533  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||  |||||||| ||||||||| |||||    
T  4103226 aaaaactgcaaattgcgacacttcatctgcgacccttaccttacaactgcctcaaagtgcatttttgcaacagttgttgcggctgtt 4103312  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 707 - 771
Target Start/End: Complemental strand, 52477378 - 52477314
Alignment:
Q  707 ttcctcttcctcgttatgccttcacacacactcgctctcacactcccaacctaacctacacactc 771  Q
    ||||| |||||||||||| |||||||| | ||||||||||||||||||||||| |||||||||||    
T  52477378 ttccttttcctcgttatggcttcacacgctctcgctctcacactcccaacctagcctacacactc 52477314  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 697 - 759
Target Start/End: Complemental strand, 2302296 - 2302234
Alignment:
Q  697 tcctcactcgttcctcttcctcgttatgccttcacacacactcgctctcacactcccaaccta 759  Q
    ||||||||| ||| |||||||| |||||||||||  |||| ||||||||||||||||||||||    
T  2302296 tcctcactccttcttcttcctcattatgccttcaatcacagtcgctctcacactcccaaccta 2302234  T

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Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 4747667 - 4747740
Alignment:
Q  49 gggcaaattgaagtaaaaagggagcctatgccatatacaatgcaatctacattatatagttattctaatacagc 122  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  4747667 gggcagattgaagtaaaaagggagcccatgccatacacaatgcaatctacattatgtagttgttctaatacagc 4747740  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 438 - 517
Target Start/End: Complemental strand, 27513831 - 27513752
Alignment:
Q  438 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaac 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||  || ||||||||| ||||  ||||||||    
T  27513831 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttactttgcaactgcctcaaagtgcatttttgcaac 27513752  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 4709644 - 4709686
Alignment:
Q  55 attgaagtaaaaagggagcctatgccatatacaatgcaatcta 97  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  4709644 attgaagtaaaaagggagcccatgccatacacaatgcaatcta 4709686  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 437 - 533
Target Start/End: Original strand, 27437912 - 27438010
Alignment:
Q  437 tcactacaagaaaaac--tgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtt 533  Q
    ||||||||||||||||  |||||||||||||||||||||||||| |||||||||  || ||||||||| ||||  |||||||| ||||||||| |||||    
T  27437912 tcactacaagaaaaacactgcaaattgcgacacttcatctgcgatccttaccttgcaactgcctcaaagtgcatttttgcaacagttgttgcggctgtt 27438010  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 437 - 535
Target Start/End: Original strand, 9775128 - 9775225
Alignment:
Q  437 tcactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgactgtttg 535  Q
    |||||||||||||| |||||  |||||||||||||||||||||||||| |||| ||  |||||||||||||  |||||||  ||||||||| |||||||    
T  9775128 tcactacaagaaaa-ctgcattttgcgacacttcatctgcgacccttaacttacaaccgcctcaaaatgcatttttgcaatagttgttgcggctgtttg 9775225  T

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Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 438 - 517
Target Start/End: Original strand, 15327849 - 15327928
Alignment:
Q  438 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaac 517  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||  || ||||||||| ||||  ||||||||    
T  15327849 cactacaagaaaaactgcaaattgtgacacttcatctgcgacccttactttgcaactgcctcaaagtgcatttttgcaac 15327928  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 438 - 517
Target Start/End: Original strand, 15508218 - 15508297
Alignment:
Q  438 cactacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaac 517  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||  || ||||||||| ||||  ||||||||    
T  15508218 cactacaagaaaaactgcaaattgtgacacttcatctgcgacccttactttgcaactgcctcaaagtgcatttttgcaac 15508297  T

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Target: scaffold0131 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 460 - 529
Target Start/End: Original strand, 10296 - 10365
Alignment:
Q  460 tgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgac 529  Q
    ||||||||||||| ||||||||||||||||||| ||||||||  ||||  |||||||| |||| ||||||    
T  10296 tgcgacacttcatttgcgacccttaccttataactgcctcaatgtgcaactttgcaacagttgctgcgac 10365  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 441 - 529
Target Start/End: Original strand, 111003 - 111091
Alignment:
Q  441 tacaagaaaaactgcaaattgcgacacttcatctgcgacccttaccttataattgcctcaaaatgcacatttgcaacggttgttgcgac 529  Q
    |||||||||| | |||  |||||||||| ||  ||||||||||||||||||| ||||||||  |||| ||| ||||| |||||||||||    
T  111003 tacaagaaaatcagcattttgcgacactgcaattgcgacccttaccttataactgcctcaatgtgcatattcgcaacagttgttgcgac 111091  T

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