View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15976_low_12 (Length: 442)
Name: NF15976_low_12
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 72 - 425
Target Start/End: Original strand, 20641254 - 20641608
Alignment:
| Q |
72 |
gaatgaagaagttttcatgaaaatgcctcctggtttttctgtttctcaaccagacatggtttgcaaattacgaaaatcactttatggcttaaaacaagct |
171 |
Q |
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| T |
20641254 |
gaatgaagaagttttcatgaaaatgcctcctggtttttctgtttctcaaccagacatggtttgcaaattacgaaaatcactttatggcttaaaacaagct |
20641353 |
T |
|
| Q |
172 |
ccgcgttgctggtttgctaagctatctactgccctcaaatcttatggttttcgacaatcatatcttgattat-ctttgttcactctgcaccaagaaggca |
270 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20641354 |
ccgcattgctggtttgctaagctatctgctgccctcaaatcttatggttttcgacaatcatatcttgattattctttgttcactctgcaccaagaaggca |
20641453 |
T |
|
| Q |
271 |
gccaacttgtagttctcgtttacgtcgatgatttaataattgcaggtaatactccttctgcaatcaagcgctttaagctctacctcagcaaatgttttca |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20641454 |
gccaacttgtagttctcgtttacgtcgatgatttaataattgcaggtaatactccttctgcaatcaagcgctttaagctctacctcagcaaatgttttca |
20641553 |
T |
|
| Q |
371 |
tatgaaagatctcggtgttttgaaatattttttgggtatcgaagttgccagaaat |
425 |
Q |
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| T |
20641554 |
tatgaaagatctcggtgttttgaaatattttttgggtatcgaatttgccagaaat |
20641608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 262 - 425
Target Start/End: Original strand, 52795378 - 52795541
Alignment:
| Q |
262 |
aagaaggcagccaacttgtagttctcgtttacgtcgatgatttaataattgcaggtaatactccttctgcaatcaagcgctttaagctctacctcagcaa |
361 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52795378 |
aagaaggcagccaacttgtagttcttgtttacgtcgatgatttaataattgcaggtaatactccttctgcaatcaggcgctttaagctctacctcagcaa |
52795477 |
T |
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| Q |
362 |
atgttttcatatgaaagatctcggtgttttgaaatattttttgggtatcgaagttgccagaaat |
425 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52795478 |
atgttttcatatgaaagatctcggtgttttgaaatattttctgggtatcgaagttgccagaaat |
52795541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 37 - 425
Target Start/End: Original strand, 33158938 - 33159326
Alignment:
| Q |
37 |
atggatgtgcacaatgcgtttctacatggagatctgaatgaagaagttttcatgaaaatgcctcctggtttttctgtttctcaaccagacatggtttgca |
136 |
Q |
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|||||||||||||| || ||||||||||||||| || | || ||||| || ||||||||||||||||||||||| | || |||||| ||| || |||| |
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| T |
33158938 |
atggatgtgcacaacgcctttctacatggagatttgcacgaggaagtctttatgaaaatgcctcctggtttttcaatatcacaaccaaacacagtctgca |
33159037 |
T |
|
| Q |
137 |
aattacgaaaatcactttatggcttaaaacaagctccgcgttgctggtttgctaagctatctactgccctcaaatcttatggttttcgacaatcatatct |
236 |
Q |
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| | || |||||||| ||||| |||||||||||||| |||||| ||| |||||||| ||| ||||||||||||| |||||||| | || ||||| || |
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| T |
33159038 |
agcttcgcaaatcactctatgggttaaaacaagctcca-gttgctagttcgctaagctctctgctgccctcaaatcatatggtttccagcagtcatacct |
33159136 |
T |
|
| Q |
237 |
tgatta-tctttgttcactctgcaccaagaaggcagccaacttgtagttctcgtttacgtcgatgatttaataattgcaggtaatactccttctgcaatc |
335 |
Q |
| |
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|| || |||||||||||| |||| |||||||| | |||||||| || || || || || ||||| || || |||||||| |||||||||||||| ||| |
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| T |
33159137 |
cgactactctttgttcactttgcagcaagaaggaactcaacttgtggtcctagtatatgttgatgacttgattattgcaggaaatactccttctgctatc |
33159236 |
T |
|
| Q |
336 |
aagcgctttaagctctacctcagcaaatgttttcatatgaaagatctcggtgttttgaaatattttttgggtatcgaagttgccagaaat |
425 |
Q |
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||||| ||||||||||| || |||| || |||||||||||||| || ||||| ||||| |||||| | ||||| ||||||||| ||||| |
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| T |
33159237 |
aagcgatttaagctctatcttagcacctgctttcatatgaaagaccttggtgtcttgaagtattttctaggtattgaagttgcccgaaat |
33159326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 6382974 - 6383083
Alignment:
| Q |
85 |
ttcatgaaaatgcctcctggtttttctgtttctcaaccagacatggtttgcaaattacgaaaatcactttatggcttaaaacaagctccgcgttgctggt |
184 |
Q |
| |
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||||||||| |||| ||||||||| | ||||||||||| ||||| ||||| | | || ||||| || || |||||||||||||| ||||| |||| |
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| T |
6382974 |
ttcatgaaactgccccctggttttcgtccctctcaaccagagatggtatgcaagcttgggaagtcactgtacggattaaaacaagctccccgttgttggt |
6383073 |
T |
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| Q |
185 |
ttgctaagct |
194 |
Q |
| |
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|||||||||| |
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| T |
6383074 |
ttgctaagct |
6383083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 1618778 - 1618669
Alignment:
| Q |
85 |
ttcatgaaaatgcctcctggtttttctgtttctcaaccagacatggtttgcaaattacgaaaatcactttatggcttaaaacaagctccgcgttgctggt |
184 |
Q |
| |
|
||||||||| |||| ||||||||| | ||||||||||| ||||| ||||| | | || ||||| || || |||||||||||||| ||||| |||| |
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| T |
1618778 |
ttcatgaaactgccccctggttttcgtccctctcaaccagagatggtatgcaagcttgggaagtcactgtacggattaaaacaagctccccgttgttggt |
1618679 |
T |
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| Q |
185 |
ttgctaagct |
194 |
Q |
| |
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|||||||||| |
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| T |
1618678 |
ttgctaagct |
1618669 |
T |
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