View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15976_low_14 (Length: 430)
Name: NF15976_low_14
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 20048279 - 20047866
Alignment:
| Q |
1 |
ttttgggaaggtggtcctttgcttgctacccttttcctatgtgttgtttatggtctaattgcagtctggcgggcattgttctcatgttttcttcccgaat |
100 |
Q |
| |
|
|||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||| |
|
|
| T |
20048279 |
ttttgggaaggtaatcctttagttgctacgcttttcctatgtgttgtttatggtctaattgcagtcctgcgggcgttgttctcatgttttcttccccaat |
20048180 |
T |
|
| Q |
101 |
ttattcttgattggttttgtgaatgtaaaaaagtcttctctttacctctcctccaaagtcactctcgtaaacaaagtgagggagtctcctcgtttccctc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20048179 |
ttattcttgattggttctgtgaatgtaaaaaattcttctctttacctctcctccaaagtcactctcgtaaacaaagtgacggagtctcctcgtttccctc |
20048080 |
T |
|
| Q |
201 |
catcccctttcctcagaaagcatgcctctcccttactctcataactcccaaccaaaacacaatcagagatcaatcttaatgctagttcaaatcaaatgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20048079 |
catcccctttcctcagaaagcatgcctctcccttactctcataactcccaaccaaaacacaatcagagatcaatcttaatgctagttcaaatcaaatgaa |
20047980 |
T |
|
| Q |
301 |
gaaacataaagtttttcaaccatcatgttgtgtctaatattaagttattacatgaaaaatacaaatggtaatccatgtatgattgcagcaccaatatttc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20047979 |
gaaacataaagtttttcaaccatcatgttgtgtctaatattaagttattacatgaaaaatacagatggcaatccatgtatgattgcagcaccaatatttc |
20047880 |
T |
|
| Q |
401 |
cttctgtatttctt |
414 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20047879 |
cttctgtatttctt |
20047866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University