View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15976_low_15 (Length: 429)
Name: NF15976_low_15
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 200 - 411
Target Start/End: Original strand, 20048451 - 20048660
Alignment:
| Q |
200 |
tgagtaatttataggaaaaatgcaaacatatagactgtaatgatgcatttcatgatccattttctccattaaactgggaaattcattttacccattaccg |
299 |
Q |
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| T |
20048451 |
tgagtaatttataggaaaaatgcaaacatatagactgtaatgatgcatttcatgatccattttctccattaaactgggaaattcattt-acccattaccg |
20048549 |
T |
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| Q |
300 |
catctaaatacttcctgttaatcgagtcatacaccttttcgaaatcaaccttcaataacagtaactctttatcattttttcttgcattatcaaccacttc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
20048550 |
catctaaatacttcctgttaatcgagtcatacaccttttcgaaatcaaccttcaataacagtaactctttatca-tttttcttgcattatcaaccacctc |
20048648 |
T |
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| Q |
400 |
atctgctattag |
411 |
Q |
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|||||||||||| |
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| T |
20048649 |
atctgctattag |
20048660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 20048268 - 20048380
Alignment:
| Q |
2 |
accttcccaaaacaaggctttcgtccaccgagtttgaccattcataccattccaaagctactgctacgaaggtctctagtgaccttgtgtacgaaacatt |
101 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | |
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| T |
20048268 |
accttcccaaaacaaggctttcgtccactgagtttgaccattcataccattccaaagctactgctatgaaggtctctagtgaccttgtgtatgaaacgct |
20048367 |
T |
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| Q |
102 |
aattgtgaaacta |
114 |
Q |
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|| |||||||||| |
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| T |
20048368 |
aactgtgaaacta |
20048380 |
T |
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