View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15976_low_16 (Length: 427)
Name: NF15976_low_16
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 54 - 410
Target Start/End: Complemental strand, 3684672 - 3684322
Alignment:
| Q |
54 |
tcctaccacactcctagtgcccaaaatcaaaggaagaatggatcaagcatactccaccagagcgaagagacacaagtgataagcaagcagactcgaacaa |
153 |
Q |
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| T |
3684672 |
tcctaccacactcctattgcccaaaatcaaaggaagaatggatcaagcatactccaccagagcgaagagacacaagtgataaggaagcaggttcgaaaaa |
3684573 |
T |
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| Q |
154 |
ccccacttaaagacacccaaacaagcaccccacatagtgagactaccaactccagcagagaattggttccaccagccactcatagtgggaacaaggagca |
253 |
Q |
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| T |
3684572 |
ccccacttaaagacacccaaacaagcaccccacacagtgagactaccgactccagcagagaactggttccaccagccactcatagtgggaacaaggagaa |
3684473 |
T |
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| Q |
254 |
tcaatgtgtttctcaaaaaaccaataccacggccacggctcttatgaactaattcctccacatttagtacttactagaaaacagaacatcattaaaggat |
353 |
Q |
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| T |
3684472 |
tcaatgtgtttcccaaaaaaccaatacca------cggctcttatgaactaagtcctccacatttagtacttactagaaaacaaaacatcattaaaggat |
3684379 |
T |
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| Q |
354 |
gtctatatagaccacacgacagtatgtcaaaccaacaaaaaatcacaagtaatcttt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
3684378 |
gtctatatagaccacacgacagtatgtcaaaccaacaaaatatcacacctaatcttt |
3684322 |
T |
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