View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15976_low_19 (Length: 376)
Name: NF15976_low_19
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 49 - 356
Target Start/End: Complemental strand, 49216192 - 49215885
Alignment:
| Q |
49 |
caatctttgaaggctaatccaaaattgagcaatccacctaaccatatacatggtgaacaagtggctgctgggtggccatcttggctttccaaggttgctg |
148 |
Q |
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| T |
49216192 |
caatctttgaaggctaatccaaaattgagcaatccacctaaccatatacatggtgaacaagtggctgctgggtggccatcttggctttccaaggttgctg |
49216093 |
T |
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| Q |
149 |
gagaagccatacatggattgacgcctcgaagggccgattcttttcacaaacttgataaggtatgccaatgccttgatttgtttttgttatcttcatatga |
248 |
Q |
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| T |
49216092 |
gagaagccatacatggattgacgcctcgaagggccgattcttttcacaaacttgataaggtatgccaatgccttgatttgtttttgttatcttcatatga |
49215993 |
T |
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| Q |
249 |
atttttcagaatttattgtttattgttgtgtgcaactcgtagtttactgattagtagccgctcgagagcaggatcttagtatttaaacactagttgtatt |
348 |
Q |
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| T |
49215992 |
atttttcagaatttattgcttattgttgtgtgcaactcgtagtttactgattagtagccgctcgagagcaggatcttagtatttaaacactagttgtatt |
49215893 |
T |
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| Q |
349 |
taaattgg |
356 |
Q |
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| T |
49215892 |
taaattgg |
49215885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 6700119 - 6700236
Alignment:
| Q |
51 |
atctttgaaggctaatccaaaattgagcaatccacctaaccatatacatggtgaacaagtggctgctgggtggccatcttggctttccaaggttgctgga |
150 |
Q |
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| T |
6700119 |
atcttcgaaggcgaatccgaggttgagtaatccacctaataatgttcatggtgaacaggttgcagctggttggccttcttggctttctaaggttgctggt |
6700218 |
T |
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| Q |
151 |
gaagccatacatggattg |
168 |
Q |
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| T |
6700219 |
gaagctattaatggattg |
6700236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 47180847 - 47180792
Alignment:
| Q |
79 |
aatccacctaaccatatacatggtgaacaagtggctgctgggtggccatcttggct |
134 |
Q |
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| T |
47180847 |
aatccacctaagcatttacgtggtgaacaggttgctgctggatggccatcttggct |
47180792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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