View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15976_low_2 (Length: 724)

Name: NF15976_low_2
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15976_low_2
NF15976_low_2
[»] chr3 (1 HSPs)
chr3 (17-707)||(28533697-28534375)


Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 17 - 707
Target Start/End: Complemental strand, 28534375 - 28533697
Alignment:
Q  17 accatagaatatatttgacttaaatacttaaaaattacaaaaaatagtcaagttgatttttcgttgtcaattacaatgttgaactttaatttctaagaga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   | | ||            ||||||||||||||||||||||||||||||||    
T  28534375 accatagaatatatttgacttaaatacttaaaaattacaaaaaatag---attggaga----------aattacaatgttgaactttaatttctaagaga 28534289  T
Q  117 ttggagaaattaaatccttgtagtgctattacctccaaaaaagaggcaattgagagcttaagcaaatcaaattaagttcagtnnnnnnngtaagccgatt 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||    
T  28534288 ttggagaaattaaatccttgcagtgctattacctccaaaaaagaggcaattgagagcttaagcaaatcaaattaagttcagtaaaaaaagtaagccaatt 28534189  T
Q  217 taaaaagaaatttcttacttagggcactgatcagcaacatataaaaagttgctctcttacttcaaaactctggttaagcaat---catttgaaatcatag 313  Q
    || |||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||| |||   ||||| || ||||||    
T  28534188 tataaagaaatttcttacttagggcactgatcagcaacaaa--aaaagttgctctcttacttcaaaactctggttaagtaataatcatttaaactcatag 28534091  T
Q  314 ttcaccaaacattttagtgacaatgcaagagactacttaaaacagcactttctacaaagtatggttaatgcaagtcctatggatcaagttctttacatag 413  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  28534090 ttcaccaaacatttcagtgacaatgcaagagactactgaaaacagcactttctacaaagtatggttaaagcaagccctatggatcaagttctttacatag 28533991  T
Q  414 ctctgtacatattacctttcttatatataaaaaagtcagactcaagggaatttagcagttcaacaatggaatcttcattggatccattgaagtgctccaa 513  Q
    | |||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28533990 ccctgtacatattacctttcttatatatcaaaaagtcactctcaagggaatttagcagttcaacaatggaatcttcattggatccattgaagtgctccaa 28533891  T
Q  514 catatcagtcaaagtagcctgaaaccaatcaaccacacattttataaccacaaaacaaaggatataaacagatatcacaaagcttttaatcagaaatata 613  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  28533890 catatcagtcaaagtagcctgaaaccaattaaccacacattttataaccacaaaacaaaggatataaacagatatcataaagcttttaatctgaaatata 28533791  T
Q  614 aacaaaaagttctcactaacccctgcatcaaggttcttcagccactctacaatagaactctctgtagctttcaacttaattatattcacttcct 707  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  28533790 aacaaaaagttctcactaaccccttcatcatggttcttcagccactctacaacagaactctctgtagctttcaacttaattaaattcacttcct 28533697  T

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