View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15976_low_21 (Length: 362)
Name: NF15976_low_21
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 31161786 - 31162128
Alignment:
| Q |
1 |
aaaattattatgttattgaattctccttttatatattcaagcaatttggtctattttgatttagcttt-gatctgtcattatcggtttttt-aggtgatc |
98 |
Q |
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| T |
31161786 |
aaaattattatgttattgaattctccttttatat--tcaagcaatttggtctattttgatttagcttttgatctgtcattatcggtttttttatgtgatc |
31161883 |
T |
|
| Q |
99 |
gttttcaaattgaatttagaattaatttacccttggggatggctagtagtaacaaccgaaaattgagagattcttgagcatgagcatgagcatgagcatg |
198 |
Q |
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| T |
31161884 |
gttttcaaattgaatttataattaatttacccttggggatggctagtagtaacaaccgaaaattgagagattct------tgagcatgagcatgagcata |
31161977 |
T |
|
| Q |
199 |
ttgactataggaatatgtcactataaacatgtgctattaacttattaataatcacttttcttaatgttttatctaattattaatcacctaaataattaga |
298 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31161978 |
ttgactataggagtatgtcaatataaacatgtgctattaacttattaataatcacttttcttaatgttttatctaattattaatctcctaaataattaga |
31162077 |
T |
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| Q |
299 |
agttttgaatgacttgtcctagcctttttgtattgatttgaacttaattgt |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31162078 |
agttttgaatgacttgtcctagcctttttgtattgatttgaacttaattgt |
31162128 |
T |
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