View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15976_low_22 (Length: 354)
Name: NF15976_low_22
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 26019170 - 26018824
Alignment:
| Q |
1 |
atgcattcgtcccgatacacatgactagcaatggaagttgtccataagcttacagttaacaggaagttccatggcttggttaggatcaataccatagaaa |
100 |
Q |
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| T |
26019170 |
atgcattcgtcccgatacacatgactagcaatggaagttgtccataagcttacagttaacaggaagttccatggcttggttaggatcaataccatagaaa |
26019071 |
T |
|
| Q |
101 |
gaaagcaatcctgaatccttataacgacataggcattgaagatcggctttggcaatagccgagcagcaaacatcagatggcttttgaccattaactgaat |
200 |
Q |
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| T |
26019070 |
gaaagcaatcctgaatccttataacgacataggcattgaagatcggctttggcaatagccgagcagcaaacatcagatggcttttgaccattaactgaat |
26018971 |
T |
|
| Q |
201 |
tgtcgccactaacatacggcgcgcatgccttcagtccttgttttgtcatgtgacataacgactgaccattaaccaacaacatggtattggcaatgatcaa |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26018970 |
tgtcaccactaacatacggcgcgcatgccttcagtccttgttttgtcatgtgacataacgactgaccattaaccaacaacatggtattggcaatgatcaa |
26018871 |
T |
|
| Q |
301 |
caatatgcccacaatcataaccttgttgtatgcctccatctctgctc |
347 |
Q |
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| T |
26018870 |
caatatgcccacaatcataaccttgttgtatgcctccatctctgctc |
26018824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 40 - 343
Target Start/End: Complemental strand, 26003271 - 26002968
Alignment:
| Q |
40 |
gtccataagcttacagttaacaggaagttccatggcttggttaggatcaataccatagaaagaaagcaatcctgaatccttataacgacataggcattga |
139 |
Q |
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||||| ||||||||| ||||| || || ||||||||||| | |||||||||||||||||||||||||| ||||||||||| |||| ||| || |||| | |
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| T |
26003271 |
gtccacaagcttacacttaactgggagatccatggcttgatctggatcaataccatagaaagaaagcaaccctgaatccttgtaactacaaagacattca |
26003172 |
T |
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| Q |
140 |
agatcggctttggcaatagccgagcagcaaacatcagatggcttttgaccattaactgaattgtcgccactaacatacggcgcgcatgccttcagtcctt |
239 |
Q |
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||||| || |||||| |||| ||||||| ||||| ||| ||||| | | | ||| | ||||| ||||| ||| | |||||||||||||||| |
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| T |
26003171 |
agatcagccttggcagtagcatggcagcaagcatcacttggaatttgaaaagcagcaattttgacaccactcacatatggctcacatgccttcagtcctt |
26003072 |
T |
|
| Q |
240 |
gttttgtcatgtgacataacgactgaccattaaccaacaacatggtattggcaatgatcaacaatatgcccacaatcataaccttgttgtatgcctccat |
339 |
Q |
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|||||||| |||||||| |||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| |
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| T |
26003071 |
tgtttgtcatctgacataatgactgaccatcaatcaacaacatggtattggcaatgatcaacaatatccccacaatcataatcttcttgtatgcctccat |
26002972 |
T |
|
| Q |
340 |
ctct |
343 |
Q |
| |
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|||| |
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| T |
26002971 |
ctct |
26002968 |
T |
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