View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15976_low_27 (Length: 320)
Name: NF15976_low_27
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 36600917 - 36600751
Alignment:
| Q |
12 |
aaaggtaattattgggagcagaggaaggtggcctttttgttccttttacttattttcgatttctgaaaagccatttgcatgtgagggtcaacagtaataa |
111 |
Q |
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| T |
36600917 |
aaaggtaattattgggagcagaggaaggtggcctttttgttctttttacttattttcgatttctgaaaagccatttgcatgtgagggtcaacagtaataa |
36600818 |
T |
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| Q |
112 |
cttgtccttgaatctatggatatacattacttgatttgagcaacacaaatgctaatcttaaggttttcttat |
183 |
Q |
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| T |
36600817 |
cttgtccttaaatctatggata-----tacttgatttgagcaacacaaatgctaatcttaaggttttcttat |
36600751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 176 - 305
Target Start/End: Complemental strand, 36600727 - 36600598
Alignment:
| Q |
176 |
tttcttatgatcttgtattgtgaaccctctatatcacacgatttactacattgacattgcacctttttcattcatcggctggtcaagcaaactaattagg |
275 |
Q |
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| T |
36600727 |
tttcttatgatcttgttttgtgaaccctctatatcacacgatttactacattgacattgcacctttttcattcatgggctggtcaagcaaactaattagg |
36600628 |
T |
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| Q |
276 |
ttgttgatttgacaccataatcaccaaatt |
305 |
Q |
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| T |
36600627 |
ttgttgatttgacaccataatcaccaaatt |
36600598 |
T |
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