View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15976_low_29 (Length: 311)
Name: NF15976_low_29
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 161 - 295
Target Start/End: Original strand, 40376215 - 40376349
Alignment:
| Q |
161 |
atgatgattgatatgtgaaatgggtttgtgtagaaattgtgaatggagatgggaaatcatcgctgctttctcttgttaaggcttttgactctgttcttaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40376215 |
atgatgattgatatgtgaaatgggtttgtgtagaaattgtgaatggagatgggaaatcatcgttgctttctcttgttaaggcttttgactctgttcttaa |
40376314 |
T |
|
| Q |
261 |
tgtttatgaaggattctgtaatttgaagcaggttc |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
40376315 |
tgtttatgaaggattctgtaatttgaagcaggttc |
40376349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 40376072 - 40376180
Alignment:
| Q |
18 |
aaaatggattcaccaagcaaagagcttcttacttgggctttggttaaagttgctcaacctggtgatcttgtagttgctctgcatgttcttgggactaatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40376072 |
aaaatggattcaccaagcaaagagcttcttacttgggctttggttaaagttgctcaacctggtgatcttgtagttgctctgcatgttcttgggactaatg |
40376171 |
T |
|
| Q |
118 |
gtgagtgat |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
40376172 |
gtgagtgat |
40376180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 294
Target Start/End: Original strand, 10257777 - 10257882
Alignment:
| Q |
189 |
tgtagaaattgtgaatggagatgggaaatcatcgctgctttctcttgttaaggcttttgactctgttcttaatgtttatgaaggattctgtaatttgaag |
288 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || | |||||||||| || || ||||| || || ||| || ||| ||||||||||| || ||||| |
|
|
| T |
10257777 |
tgtagaaattgtgaatcgagatgggaaatcttctttattttctcttgtcaaagcatttgattcagtgctttctggttacgaaggattctgcaacttgaaa |
10257876 |
T |
|
| Q |
289 |
caggtt |
294 |
Q |
| |
|
|||||| |
|
|
| T |
10257877 |
caggtt |
10257882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 10257616 - 10257668
Alignment:
| Q |
55 |
ctttggttaaagttgctcaacctggtgatcttgtagttgctctgcatgttctt |
107 |
Q |
| |
|
||||||| || ||||||||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
10257616 |
ctttggtcaatgttgctcaacctggtgatcttattcttgctcttcatgttctt |
10257668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University