View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15976_low_3 (Length: 706)
Name: NF15976_low_3
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 688
Target Start/End: Complemental strand, 26126836 - 26126139
Alignment:
| Q |
1 |
ttcaataattgagcaatgtcactcacagcagtgttctatccacattgcctaatttactcctaaagattcaagagatcttttagcattagtacagaaaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126836 |
ttcaataattgagcaatgtcactcacagcagtgttctatccacattgcctaatttactcctaaagattcaagagatcttttagcattagtacagaaaggt |
26126737 |
T |
|
| Q |
101 |
ttgtaaccttttagcgtttcctctcaaaactgaaacataagtatattccaaattcattactcattaatcattgtcttcaaattactcgtcttgtcacctt |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26126736 |
ttgtaaccttttggcgtttcctctcaaaactgaaacataagtatattccaaattcattactcattaatcattgtcttcaaattactcgtctcgtcacctt |
26126637 |
T |
|
| Q |
201 |
ccggatgcatcttctccctcagttaaaatccttgctgccgtcacacaactatccaaaactcagaatcgatgtgagatatctagaagtgggaaaaatttaa |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26126636 |
ccggatgcatcttctccctcagttaaaatccttgctgccgttacacaactatccaaaactcaaaatcgatgtgagatatctagaagtgggaaaaatttaa |
26126537 |
T |
|
| Q |
301 |
caaatatccaaaacttgttcagtgttggctcttttttgttgcca-nnnnnnngttaccaatcagtgggggtgactaggtt---------tgcaaggaagc |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| ||| |
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| T |
26126536 |
caaatatccaaaacttgttcagtgttggctcttttttgttgccattttttttgttaccaatcagtgggggtaactaggtttgatgcatatgcaagggagc |
26126437 |
T |
|
| Q |
391 |
cccttcctccaccttatttattgccagttttccatggggtaccgctaagttccctcatccagtcatctcagtaaaaagattttatatttttaggttagaa |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26126436 |
cccttcctccaccttatttattgccagttttccacggggtgccgctaagttccctcatccagtcatcccagtaaaaagattttatatttttaggttagaa |
26126337 |
T |
|
| Q |
491 |
gaaagatttggagtaggaaatatattgttggaatcacataaatgatgttgttcaaaagacgaaggtgtaagaaatagttcacatgttttggtcgggagga |
590 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
26126336 |
gaaagatttggagtaggaaatatattgttggaatcacataaatgatgtagttcaaaagacgaaggcgtaagaaatagttcacgtgttttggtcgggagga |
26126237 |
T |
|
| Q |
591 |
aagatatgatgctacaaaacactctatcggactttgtgccttacgacattctatctttactactgatcaaaacatgtgtaggctacgatgagctatgt |
688 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126236 |
aagataggatgctacaaaacactctatcggactttgtgccttacgacattctatctttactactgatcaaaacatgtgtaggctacgatgagctatgt |
26126139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 45512893 - 45512837
Alignment:
| Q |
98 |
ggtttgtaaccttttagcgtttcctctcaaaactgaaacataagtatattccaaatt |
154 |
Q |
| |
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|||||||||| |||| || || |||||||||||||||||||| || |||||| |||| |
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| T |
45512893 |
ggtttgtaacattttggcattccctctcaaaactgaaacataggtgtattcctaatt |
45512837 |
T |
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