View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15976_low_30 (Length: 300)
Name: NF15976_low_30
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_low_30 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 30713698 - 30713987
Alignment:
| Q |
11 |
caaaggtggtggagaaatcgataaaagatagtggactagagagcatatgcagacgagaaacaactatgaacatataatttcatcgtcttttgagagtcta |
110 |
Q |
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| T |
30713698 |
caaaggtggtggagaaatcgataaaagatagtggactagagagcatatgcaaacgagaaacaactatgaacatataatttcatcgtgttttgagagtcta |
30713797 |
T |
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| Q |
111 |
cttcaacaaccaaagaaagatcacaaactcaccaacaaagttgaggtaaataatagtccccaaagttttcagcaatgacgataacaagattaaattttgc |
210 |
Q |
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| T |
30713798 |
cttcaacaaacaaacaaagatcacaaactccccaacaaagttgaggtaaataataatccccaaagttttcagcaataacgataactagattaaattttgc |
30713897 |
T |
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| Q |
211 |
aacagtaaaatagtaaatggtcaaatgaatgtgatgttcatgatatatatcttaaaggtggagatagttttcctctggaaatattagagc |
300 |
Q |
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| T |
30713898 |
aacagtaaaatagtaaatggtcaaatgaatgtgatgttcgtgatatatatcttaaaggtgaagatagttttcctctgggaatattagagc |
30713987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 30721475 - 30721764
Alignment:
| Q |
11 |
caaaggtggtggagaaatcgataaaagatagtggactagagagcatatgcagacgagaaacaactatgaacatataatttcatcgtcttttgagagtcta |
110 |
Q |
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| T |
30721475 |
caaaggtggtggagaaatcgataaaagatagtggactagagagcatatgcaaacgagaaacaactatgaacatataatttcatcgtgttttgagagtcta |
30721574 |
T |
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| Q |
111 |
cttcaacaaccaaagaaagatcacaaactcaccaacaaagttgaggtaaataatagtccccaaagttttcagcaatgacgataacaagattaaattttgc |
210 |
Q |
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| T |
30721575 |
cttcaacaaacaaacaaagatcacaaactccccaacaaagttgaggtaaataataatccccaaagttttcagcaataacgataactagattaaattttgc |
30721674 |
T |
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| Q |
211 |
aacagtaaaatagtaaatggtcaaatgaatgtgatgttcatgatatatatcttaaaggtggagatagttttcctctggaaatattagagc |
300 |
Q |
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| T |
30721675 |
aacagtaaaatagtaaatggtcaaatgaatgtgatgttcgtgatatatatcttaaaggtgaagatagttttcctctgggaatattagagc |
30721764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 30730964 - 30731078
Alignment:
| Q |
11 |
caaaggtggtggagaaatcgataaaagatagtggactagagagcatatgcagacgagaaacaactatgaacatataatttcatcgtcttttgagagtcta |
110 |
Q |
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|||||||| ||||||||||||||||||| ||||| |||||| |||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
30730964 |
caaaggtgatggagaaatcgataaaagagagtgggttagagatcatatgtagatgagaaacaactatgaatatataatttcatcgtggtttgagagtcta |
30731063 |
T |
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| Q |
111 |
cttcaacaaccaaag |
125 |
Q |
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| T |
30731064 |
cttcaacaaacaaag |
30731078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 297
Target Start/End: Complemental strand, 7733324 - 7733245
Alignment:
| Q |
214 |
agtaaaatagtaaatggtcaaatgaatgtgatgttcatgatatatatcttaaaggtggagatagttttcctctggaaatattag |
297 |
Q |
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| T |
7733324 |
agtaaaatggtaaatgttccgatgaatgtgatgttcataatat----cttaaaggtggagatagttttcttatgggaatattag |
7733245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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