View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15976_low_32 (Length: 282)
Name: NF15976_low_32
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_low_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 7285109 - 7285360
Alignment:
| Q |
19 |
agaaaacaaatacctagagaattgattttaaggccatcattgatgtgcttcatgtggccattgagaccacataacttaacaccaaacacaatgatatcag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7285109 |
agaaaacaaatacctagagaattgattttaaggccatcattgatgtgcttcatgtggccattgagaccacataacttaacaccaaacacaatgatatcag |
7285208 |
T |
|
| Q |
119 |
tttataacattaaactctataccccattaaatataaatattataattcccaaagaaaaaactctactctctgcaccattatatatagtatcatggaaaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7285209 |
tttataacattaaactctataccccattaaatataaatattataattcccaaagaaaaaactctactctctgcaccattatatatagtatcatggaaaac |
7285308 |
T |
|
| Q |
219 |
ttaaaaactcccacattaggcaaacatgatttcaaaattcttcaatagccta |
270 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7285309 |
ttaaaaactcccacatcaggcaaacatgatttcaaaattcttcaatagccta |
7285360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University