View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15976_low_36 (Length: 244)
Name: NF15976_low_36
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 16875220 - 16874988
Alignment:
| Q |
1 |
acaacacaaacagaataaacaaggagaaaccaagctcattgtttaaaatgaaatggaagagaaaagaacaaacataacctgaagagggccattgaaagaa |
100 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16875220 |
acaacacaaacagaattaacaaggagaaaccaacctcattgtttaaaatgaaatggaagagaaaagaacaaacataacctgaagagggccattgaaagaa |
16875121 |
T |
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| Q |
101 |
ttggagaagacgcgagaaaacttgagaactttcaaattatacatcttttataaaaatcgaaagaaatattgactgtaactatatatgaggtatataaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16875120 |
ttggagaagacgcgagaaaacttgagaactttcaaattatacatcttttataaaaatcgaaagaaatattgactgtaactatatatgaggtatataaggt |
16875021 |
T |
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| Q |
201 |
gcaatgagtcttagtaatccttaatattcttgg |
233 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
16875020 |
gcaatgagtcttagtaatccttaatattgttgg |
16874988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 16881708 - 16881476
Alignment:
| Q |
1 |
acaacacaaacagaataaacaaggagaaaccaagctcattgtttaaaatgaaatggaagagaaaagaacaaacataacctgaagagggccattgaaagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16881708 |
acaacacaaacagaataaacaaggagaaaccaacctctttgtttaaaatgaaatggaagagaaaagaacaaacataacttgaagagggccattgaaagaa |
16881609 |
T |
|
| Q |
101 |
ttggagaagacgcgagaaaacttgagaactttcaaattatacatcttttataaaaatcgaaagaaatattgactgtaactatatatgaggtatataaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16881608 |
ttggagaagacgcgagaaaacttgagaactttcaaattatacatcttttataaaaatcgaaagaaatattgactgtaactatatatgaggtatataaggt |
16881509 |
T |
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| Q |
201 |
gcaatgagtcttagtaatccttaatattcttgg |
233 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
16881508 |
gcaatgagtcttagtaatccttaatattgttgg |
16881476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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