View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15976_low_38 (Length: 230)

Name: NF15976_low_38
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15976_low_38
NF15976_low_38
[»] chr2 (17 HSPs)
chr2 (1-230)||(9292365-9292594)
chr2 (5-230)||(9283654-9283879)
chr2 (1-230)||(9316465-9316694)
chr2 (1-230)||(9357620-9357846)
chr2 (1-166)||(9329036-9329201)
chr2 (1-230)||(10353558-10353787)
chr2 (1-164)||(9060665-9060828)
chr2 (1-166)||(9321413-9321578)
chr2 (87-230)||(9275044-9275187)
chr2 (106-163)||(10372403-10372460)
chr2 (1-57)||(10336281-10336337)
chr2 (1-57)||(10348228-10348284)
chr2 (106-230)||(10348324-10348448)
chr2 (5-51)||(8573142-8573188)
chr2 (1-57)||(10372307-10372363)
chr2 (191-230)||(7115116-7115155)
chr2 (1-62)||(7115271-7115332)
[»] chr3 (1 HSPs)
chr3 (1-230)||(37462935-37463164)
[»] chr4 (1 HSPs)
chr4 (1-230)||(26575310-26575539)
[»] scaffold0667 (2 HSPs)
scaffold0667 (2-57)||(4921-4976)
scaffold0667 (106-230)||(5019-5143)
[»] chr8 (2 HSPs)
chr8 (1-55)||(41966362-41966416)
chr8 (107-163)||(41966254-41966310)
[»] chr1 (4 HSPs)
chr1 (8-55)||(29467429-29467476)
chr1 (4-55)||(29423708-29423759)
chr1 (1-52)||(29452955-29453006)
chr1 (1-51)||(29442970-29443020)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 9292365 - 9292594
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgttagggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  9292365 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacaccggcgcgatcaatgttttcagactcgagaatgttagggat 9292464  T
Q  101 agcaggagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggcta 200  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292465 agcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggcta 9292564  T
Q  201 ttggaaatggcgaggaggccgttacatgaa 230  Q
    ||||||||||||||||||||||||||||||    
T  9292565 ttggaaatggcgaggaggccgttacatgaa 9292594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 9283879 - 9283654
Alignment:
Q  5 gaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgttagggatagca 104  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||  |||| ||||||||||||||||| | |||||||||||||| |    
T  9283879 gaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaatgcatacaccgccgcgttcaatgttttcagactccacaatgttagggatagga 9283780  T
Q  105 ggagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgt-gaagcagatttggctattg 203  Q
     ||||||||||||||||||||| ||||||| | ||||||| |||| ||| |||||||||  | | | |||  ||||||||  ||||| ||| ||| ||||    
T  9283779 agagggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttcagttgcgtcgtttggatgcgtaaaagca-attgggccattg 9283681  T
Q  204 gaaatggcgaggaggccgttacatgaa 230  Q
     | ||||||||||||||||||||||||    
T  9283680 tagatggcgaggaggccgttacatgaa 9283654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 9316465 - 9316694
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgttagggat 100  Q
    ||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||| |||  ||||||     || ||||| |||||||||||||||||    
T  9316465 ttctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgcatataccgccgcgattgggtttgtcagattcaagaatgttagggat 9316564  T
Q  101 agcaggagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggcta 200  Q
    |||| |||| || ||||||||||| | ||||||| | |||||||||||| ||| |||||||||||| | | ||||||||||| ||||   |||||| | |    
T  9316565 agcaagaggaaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcatgaaagcgatttgacca 9316664  T
Q  201 ttggaaatggcgaggaggccgttacatgaa 230  Q
    |||||||||||||| |||||||||||||||    
T  9316665 ttggaaatggcgagaaggccgttacatgaa 9316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 9357620 - 9357846
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgttagggat 100  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||   |||  ||||||||   |||    ||||||||||||||    
T  9357620 ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacac---cgccgtcaatgttgaaagatcggagaatgttagggat 9357716  T
Q  101 agcaggagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggcta 200  Q
    || | ||||||| |||||||||||   ||||||| |  ||||| ||||| ||| || ||||||||| | ||||| ||||||| ||||   ||||| || |    
T  9357717 aggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgcca 9357816  T
Q  201 ttggaaatggcgaggaggccgttacatgaa 230  Q
    ||||| ||||||||||||||||||||||||    
T  9357817 ttggagatggcgaggaggccgttacatgaa 9357846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 9329036 - 9329201
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgttagggat 100  Q
    ||||||||||||||||||| |||| ||| |||||| ||||||| |||||||||||||       |||||  ||||| ||||| |||||||||||||||||    
T  9329036 ttctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgatggatgttgtcagattcaagaatgttagggat 9329135  T
Q  101 agcaggagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgtt 166  Q
    |||| |||| || ||||||||||| | ||||||| | |||||||||||| ||| ||||||||||||    
T  9329136 agcaagaggtaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgtt 9329201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 10353558 - 10353787
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgttagggat 100  Q
    |||||||||||||||||||||||| ||  | |||| |||||||||| ||||||||||  |   | || | |  ||| ||||| |  ||||||||||||||    
T  10353558 ttctgaggagtttgtaatcgccggatacagaatcaaaaccgaagccatgaacgcataagcagccacggttagggttgtcagattggagaatgttagggat 10353657  T
Q  101 agcaggagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggcta 200  Q
    || | ||||||||||||||||||||| ||| ||| | ||||| |||||| | | |||||||||||| ||||||| ||||||||||||    |||  ||      
T  10353658 aggaagagggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggggcgttaggatgcgtgaaagctattacgccg 10353757  T
Q  201 ttggaaatggcgaggaggccgttacatgaa 230  Q
    | ||| ||||||||||||||||||||||||    
T  10353758 tgggacatggcgaggaggccgttacatgaa 10353787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 9060828 - 9060665
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgttagggat 100  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||  ||||||    ||| ||||| ||   ||||||||||||    
T  9060828 ttctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcatataccgccgcgattggggttgtcagagtcctcaatgttagggat 9060729  T
Q  101 agcaggagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcg 164  Q
    || | |||||| |||||||||  ||| || |||  | |||||||||||| ||| |||| |||||    
T  9060728 aggaagagggataaaagggatggtccgatctttgcgggtgttagggttccagattgtggtttcg 9060665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 9321413 - 9321578
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgc-gcgatcaatgttttcagactcaagaatgttaggga 99  Q
    |||||||||||||||||||||||||||| |||||| ||||||| || |||||||||| | | || |||||  ||||| || || || | ||||| |||||    
T  9321413 ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcata-agcagcagcgattgatgttgtcggattccataatgtcaggga 9321511  T
Q  100 tagcaggagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgtt 166  Q
    ||| | |||| || |||||||| || | ||| ||| ||||| |||||||| ||| ||||||||||||    
T  9321512 taggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgtt 9321578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 230
Target Start/End: Original strand, 9275044 - 9275187
Alignment:
Q  87 agaatgttagggatagcaggagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtga 186  Q
    ||||||||||| |||| | ||||||||||||||||||||| |||||||   |||||||||||| ||| ||| ||||| || |   ||| ||||||| |||    
T  9275044 agaatgttaggtataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcatttgcatcgtcaggatgcctga 9275143  T
Q  187 agcagatttggctattggaaatggcgaggaggccgttacatgaa 230  Q
    ||  | |||||| |||||| || || | ||||||||||||||||    
T  9275144 aggcggtttggccattggagatagcaatgaggccgttacatgaa 9275187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 10372403 - 10372460
Alignment:
Q  106 gagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 163  Q
    |||||||||||||||||| |||||||||| | |||||||||||| ||| |||||||||    
T  10372403 gagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttc 10372460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10336281 - 10336337
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 57  Q
    |||||||||||||||||||| ||| ||||| |||| ||||||| |||||||||||||    
T  10336281 ttctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaacgcata 10336337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10348228 - 10348284
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 57  Q
    ||||||||||||||||||| |||| || | ||||| |||||||||||||||||||||    
T  10348228 ttctgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcata 10348284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 10348324 - 10348448
Alignment:
Q  106 gagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattgga 205  Q
    |||||||||||||||||||   ||||||| | |||||||||||| ||| ||||||||||||  ||  || ||||||||||||   ||||   |   ||||    
T  10348324 gagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgattacccctgtgga 10348423  T
Q  206 aatggcgaggaggccgttacatgaa 230  Q
     ||||||||||||||||||||||||    
T  10348424 gatggcgaggaggccgttacatgaa 10348448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 8573188 - 8573142
Alignment:
Q  5 gaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaa 51  Q
    |||||||||||||||| |||||||| ||||| |||||||||||||||    
T  8573188 gaggagtttgtaatcggcggttaatagatcaaaaccgaagccgtgaa 8573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10372307 - 10372363
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 57  Q
    ||||||||||||||| |||||||| ||| | |||| |||||||||| ||||||||||    
T  10372307 ttctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgcata 10372363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 7115155 - 7115116
Alignment:
Q  191 gatttggctattggaaatggcgaggaggccgttacatgaa 230  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  7115155 gatttggccattggagatggcgaggaggccgttacatgaa 7115116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7115332 - 7115271
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacct 62  Q
    ||||||| |||||||||||  | ||||| |||||| ||||||||||||||| ||||| ||||    
T  7115332 ttctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaaagcatagacct 7115271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 37462935 - 37463164
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgttagggat 100  Q
    |||||||||||||||||||||||||||| | |||| |||||||||||||||||||||  |   |||| | |  ||| |  || || | ||||| |||||     
T  37462935 ttctgaggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataagcagccgcggttagggttgtttgattccataatgtaagggac 37463034  T
Q  101 agcaggagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggcta 200  Q
    ||    |||||||||||||||||||  ||||||| | |||||||||||| ||| |||||||||||| | ||||| ||||||||||||   |||||||| |    
T  37463035 aggcatagggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggcca 37463134  T
Q  201 ttggaaatggcgaggaggccgttacatgaa 230  Q
    ||||| || |||||||||||||||||||||    
T  37463135 ttggagatagcgaggaggccgttacatgaa 37463164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 26575310 - 26575539
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgttagggat 100  Q
    |||||||||||||||||||||||| ||| | |||| |||||||||||||||||||||  |   | |||| |  ||| ||||| |  ||||||||||||||    
T  26575310 ttctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcataagcagccacgattagggttgtcagattggagaatgttagggat 26575409  T
Q  101 agcaggagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggcta 200  Q
     | | ||||||||||||||||||||| || ||||   |||| ||||||| ||| || ||||||||| |||||||  |||||||||||    |||  ||      
T  26575410 gggaagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggggcgttgggatgcgtgaaagccattacgccg 26575509  T
Q  201 ttggaaatggcgaggaggccgttacatgaa 230  Q
    | ||| ||||||||||||||||||||||||    
T  26575510 tgggacatggcgaggaggccgttacatgaa 26575539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 4921 - 4976
Alignment:
Q  2 tctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 57  Q
    |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  4921 tctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 4976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 5019 - 5143
Alignment:
Q  106 gagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtga-agcagatttggctattgg 204  Q
    |||||||||||||||||||   ||||||| |  ||||||||||| ||| |||||||||||| | ||||| ||||||  ||| ||| ||||| ||  ||||    
T  5019 gagggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttggcggcgttaggatgtctgagagc-gatttcgccgttgg 5117  T
Q  205 aaatggcgaggaggccgttacatgaa 230  Q
    ||| ||||||||||||||||||||||    
T  5118 aaacggcgaggaggccgttacatgaa 5143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41966416 - 41966362
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 55  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||||    
T  41966416 ttctgaggagtttgtgatcgctggttaatggatcaaaaccgaatccgtgaacgca 41966362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 41966310 - 41966254
Alignment:
Q  107 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 163  Q
    |||||||||||||||||||| |||||||    ||||||||||| ||| |||||||||    
T  41966310 agggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 41966254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 29467476 - 29467429
Alignment:
Q  8 gagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 55  Q
    ||||||||||||  |||||||||||||| |||||||||||||||||||    
T  29467476 gagtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgca 29467429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 29423708 - 29423759
Alignment:
Q  4 tgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 55  Q
    ||||||||||||||||  | |||||||||||| |||||||||||| ||||||    
T  29423708 tgaggagtttgtaatcatcagttaatggatcaaaaccgaagccgtaaacgca 29423759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29453006 - 29452955
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaac 52  Q
    |||||||||||||||||||| || |||| |||||| |||| |||||||||||    
T  29453006 ttctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 29452955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29443020 - 29442970
Alignment:
Q  1 ttctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaa 51  Q
    |||||| |||||||||||||  ||| ||||||||| |||||||||||||||    
T  29443020 ttctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaa 29442970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University