View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15976_low_5 (Length: 540)
Name: NF15976_low_5
Description: NF15976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15976_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 88 - 521
Target Start/End: Complemental strand, 17692191 - 17691784
Alignment:
| Q |
88 |
ttccttcaacactacctcaacagatccaacatcaccacctcaacagaacttaatcatcttttcaaacaaacatgtctggttacataagggtgtggtacat |
187 |
Q |
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| T |
17692191 |
ttccttcaacactacctcaacagatacaacatcaccacctcaacagaacttaatcatcttttcaaacaaacatgtatggttacataagggtgtggtacat |
17692092 |
T |
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| Q |
188 |
ttgttcctctttgttttaaaccaccaatttgatcattctgatctttctcagtttcatatttccatacattcaattacgaaactgtcg-aaaaattgatgg |
286 |
Q |
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| T |
17692091 |
ttgttcctctttgttgtaaaccaccaatttgaccattctgatctttcccagtttcatatttccatacattcaattacgaaactttcgaaaaaattgatgg |
17691992 |
T |
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| Q |
287 |
gtttcaatgttgaaaccggtttttagtgcttttgatatggttgaaacaacgccgtcagaggaagaaggaatggattgtggggaggtggggttgatgagag |
386 |
Q |
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| T |
17691991 |
gtttcaatgttgaaaccggtttttagtgcttttgatatggttgaaacaacgccgtcagaggaagaaagaatggattgt-gggaggtggggttgatgagag |
17691893 |
T |
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| Q |
387 |
tgttgcgaatgttgaaatggttgaaaccggttttgatgcgtagtgagagaacaactcgtcgctgccgttcaggtgatgtaaaccgtggagagggtgttgt |
486 |
Q |
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| T |
17691892 |
tgttgcgaa----gaaatg-------------------cgtagtgagagaacaactcgtcgctgccgttcgggtgatgtaaaccgtgcagagggtgttgt |
17691816 |
T |
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| Q |
487 |
gaggaagaagaagataattggagggaacaacttgt |
521 |
Q |
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| T |
17691815 |
aag---gaagaagataattggagagaacaacttgt |
17691784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 32132966 - 32132902
Alignment:
| Q |
88 |
ttccttcaacactacctcaacagatccaacatcaccacctcaacagaacttaatcatcttttcaa |
152 |
Q |
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| T |
32132966 |
ttccttcaacatcacctcaacagatccaacaacaccacctcgacataacttaatcatcttgtcaa |
32132902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 260 - 393
Target Start/End: Complemental strand, 1258248 - 1258114
Alignment:
| Q |
260 |
attacgaaactgtcgaaaaa-ttgatgggtttcaatgttgaaaccggtttttagtgcttttgatatggttgaaacaacgccgtcagaggaagaaggaatg |
358 |
Q |
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| T |
1258248 |
attacgaaactgtctaaaaaattgatgagtttcaatgttgaaaccggttttgagtgcttttgatattgttgaaatggcgtcgtcaccggaagaaggagtg |
1258149 |
T |
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| Q |
359 |
gattgtggggaggtggggttgatgagagtgttgcg |
393 |
Q |
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| T |
1258148 |
gattgtggggaagtggagttgatgagagtgttgcg |
1258114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 514
Target Start/End: Complemental strand, 1258045 - 1257989
Alignment:
| Q |
458 |
ggtgatgtaaaccgtggagagggtgttgtgaggaagaagaagataattggagggaac |
514 |
Q |
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| T |
1258045 |
ggtgatgtaaaccgtggagagggtgttttgaagaagaagatgagaattggagagaac |
1257989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 30642180 - 30642116
Alignment:
| Q |
88 |
ttccttcaacactacctcaacagatccaacatcaccacctcaacagaacttaatcatcttttcaa |
152 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| |||| |
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| T |
30642180 |
ttccttcaacaccacctcaacagatccaacaacaccacctcaacataacttaatcatcttgtcaa |
30642116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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