View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15977_low_1 (Length: 250)
Name: NF15977_low_1
Description: NF15977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15977_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 5 - 194
Target Start/End: Complemental strand, 27560130 - 27559931
Alignment:
| Q |
5 |
gactgaaatgaatttgattgcaatgtttttcttttcctttgttttg----------catgtgtatctgctcctatactttccatatttctcaaacattat |
94 |
Q |
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| T |
27560130 |
gactgaaacgaatttgattgcaatgtttttcttttcctttgttttgttgtgttttgcatgtgtatctgctcctatactttccatatttctcaaacattat |
27560031 |
T |
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| Q |
95 |
ctgcattgtgattttagaggccttcaagattgtctataatttcaaacaactcattaaggtgttttgttacagattgaaaagttacaggaggagaagcagg |
194 |
Q |
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| T |
27560030 |
ctgcattgtgattttagaggccttcaagattgtctataatttcaaacaactcattaaggtgttttgttacagattgaaaagttacaggaggagaatcagg |
27559931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 42 - 194
Target Start/End: Complemental strand, 36667645 - 36667494
Alignment:
| Q |
42 |
tttgttttgcatgtgtatctgctcctatactttccatatttctcaaacattatctgcattgtgattttagaggccttcaagattgtctataatttcaaac |
141 |
Q |
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| T |
36667645 |
tttgttttgcatgtgtatctgcaactatactttccatgattctcaaacattatctgcattctgattttagaggcctt-aagattgtctctaatttcaaac |
36667547 |
T |
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| Q |
142 |
aactcattaaggtgttttgttacagattgaaaagttacaggaggagaagcagg |
194 |
Q |
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| T |
36667546 |
aactcattaaggtgttttgttacagattgaaaagttacaggaggagaaccagg |
36667494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 27566442 - 27566509
Alignment:
| Q |
183 |
aggagaagcaggttgcactaggaagttctttctattagaaattatatgaatagtgtgaatcagtttcg |
250 |
Q |
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| T |
27566442 |
aggagaagcaggttgcactaggaagttctttctattagaaattatatgaagagtgtgaatcagtttcg |
27566509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 29409518 - 29409335
Alignment:
| Q |
18 |
ttgattgcaatgtttttcttttcctttgttttg-------catgtgtatctgctcctatactttccatatttctcaaacattatctgcattgtgatttta |
110 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||| |||||| ||||||| |||||||||||||| |||||| |||||||| |
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| T |
29409518 |
ttgattgcaatgtttttcttttcctttgttttgtgttttgcttgtgtatctgcacctatattttccatgattctcaaacattatatgcattatgatttta |
29409419 |
T |
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| Q |
111 |
gaggccttcaagattgtctataa-----tttcaaacaactcattaaggtgttttgttacagattgaaaagttacaggaggagaa |
189 |
Q |
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| T |
29409418 |
gtggccttcaagattgtctataactaattttcaaccaactcattaagatgttttgttacagattgaaaagttacaggaggagaa |
29409335 |
T |
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