View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_high_1 (Length: 697)
Name: NF15978_high_1
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 667; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 1 - 688
Target Start/End: Complemental strand, 47699716 - 47699029
Alignment:
| Q |
1 |
caaacattcctaattccatacatgttatccaacttgtttcagctaaccaatgaaaagtagtcgaataagcatacgaatcaatgaatcacactctaagaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47699716 |
caaacattcctaattccatacatgttatccaacttgtttcagctaaccaatgaaaagtagtcgaataagcatacgaatcaatgaatcacactctaagaat |
47699617 |
T |
|
| Q |
101 |
gataaagttgtatatgatttaagtatatattgtctacaaaatttcacagttaacaggcattatacatggaagtagaagcattctaatactgagctttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47699616 |
gataaagttgtatatgatttaagtatatattgtctacaaaatttcacagttaacaggcattatacatggaagtagaagcattctaatactgagctttctt |
47699517 |
T |
|
| Q |
201 |
acctttaaactctcaacttctgctgttagtgattcaaccttctgtgtgtcttcaacaataacctgggtctcttgaataacaggaggtgcttcttcaatgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47699516 |
acctttaaactctcaacttctgctgttagtgattcaaccttctgtgtgtcttcaacaataacctgggtctcttgaataacaggaggtgcttcttcaatgg |
47699417 |
T |
|
| Q |
301 |
annnnnnngcattctctcgctcctttgcaagcacggaagtggtttcatcaactttgctctgcatatcctgcagggagttctgcagttttgctatctcttg |
400 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47699416 |
atttttttgcattctctcgctcctttgcaagcacggaagtggtttcatcaactttgctctgcatatcctgcagggagttctgcagttttgctatctcttg |
47699317 |
T |
|
| Q |
401 |
tgctttggattcttctagattggtctgcaggattccatatagtttctttagggattacaaaataagaggatacttggtcacttgcatagattgatctttt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47699316 |
tgctttggattcttctagattggtctgcaggattccatatagtttctttagggattacaaaataagaggatacttggtcacttgcatagattgatctttt |
47699217 |
T |
|
| Q |
501 |
attctgccttgtttttattccccatttgtgcaattttacaaaacgcatgattgtgaaaaatatcaggataaaaacgtcctccatattttatctaactaac |
600 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47699216 |
attctgccttgtttttattccccatttgtgcaattttacaaaacgcatgattgtgaaaaatatcaggataaaaacgtcctccatattttatctaactaac |
47699117 |
T |
|
| Q |
601 |
aaacgtatatctcacccttaaacttttttctagttggaggcgccatgtgagttcctccactcgtttttcaagcttatcctttgcttct |
688 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47699116 |
aaacgtatatctcacccttaaacttttttctagttggaggcgccatgtgagttcctccactcgtttttcaagcttatcctttgcttct |
47699029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 606 - 688
Target Start/End: Original strand, 35823156 - 35823238
Alignment:
| Q |
606 |
tatatctcacccttaaacttttttctagttggaggcgccatgtgagttcctccactcgtttttcaagcttatcctttgcttct |
688 |
Q |
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|||||||||||||||||| |||||| |||||||| |||||| | |||||||||||| |||||||||||||| ||||||||||| |
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| T |
35823156 |
tatatctcacccttaaacctttttccagttggagacgccatttaagttcctccacttgtttttcaagcttaccctttgcttct |
35823238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 342 - 429
Target Start/End: Original strand, 35822886 - 35822973
Alignment:
| Q |
342 |
gtttcatcaactttgctctgcatatcctgcagggagttctgcagttttgctatctcttgtgctttggattcttctagattggtctgca |
429 |
Q |
| |
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|||||||||||||| |||| ||| ||||||| || |||||||||||||||||||| |||||||| ||||| ||||||| ||||||| |
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| T |
35822886 |
gtttcatcaacttttctcttcatctcctgcaatgaattctgcagttttgctatctcctgtgctttaaattctgctagatttgtctgca |
35822973 |
T |
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