View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_high_12 (Length: 476)
Name: NF15978_high_12
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 160 - 366
Target Start/End: Original strand, 3589160 - 3589366
Alignment:
| Q |
160 |
cgcaggtgatatcagaaatgcaagactataaacaacctcgtaaatacgtcgtcttctaatagttccaaaatcaaaatcaaacataacattattggcacct |
259 |
Q |
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| T |
3589160 |
cgcaggtgatatcagaaatgcaagactataaacaacctcgtaaatacgtcgtcttctaatagttccaaaatcaaaatcaaacataacattattggcacct |
3589259 |
T |
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| Q |
260 |
atctaagagcataagcgaaatccattcaatttttgtcagaacaaaactcccttaataagcgaaatacaaatacatattcccactcttcaacatgttttat |
359 |
Q |
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| T |
3589260 |
atctaagagcataagcgaaatccattcaatttttgtcagaacaaaactcccttaataagcgaaatacaaatacatattcccactcttcaacatgttttat |
3589359 |
T |
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| Q |
360 |
ctccctt |
366 |
Q |
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||||||| |
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| T |
3589360 |
ctccctt |
3589366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 3589012 - 3589079
Alignment:
| Q |
20 |
tactaatacttaattttatagctgccagcaagttgaagaaaattcattgggtaaaattccaccccaac |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3589012 |
tactaatacttaattttatagctgccagcaagttgaagaaaattcattgggtaaaattccaccccaac |
3589079 |
T |
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