View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_high_13 (Length: 449)
Name: NF15978_high_13
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 23150200 - 23149920
Alignment:
| Q |
17 |
tttaaatacatctcactctttgcttccaaggactaaggcttcagagtgtttgcgagta-------cctcaatcttcaaccttgatagatcgttgttcgac |
109 |
Q |
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| T |
23150200 |
tttaaatacatctcactctttgcttccaaggacttggacttcagagtgcttgcaagtatccccaccctcaatcttcaaccttgatagatcgttgttcgac |
23150101 |
T |
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| Q |
110 |
gtcaaccatcacttcttatgacctcgaattagttccgccgtatgtaggaactagtttcccattaatcttaatttccactaaagatcaaaacctccttaaa |
209 |
Q |
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| T |
23150100 |
gtcaaccatcacttcttatgacctcgaattagttcctccgtatgtgggaactagtttcccattaaacttaatttccactaaagatcaaaacctccttaaa |
23150001 |
T |
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| Q |
210 |
attcaaaacacttcaaatggccaaacaacaacaactttatcctaataacattgttctccattctacatccgacgatgttaa |
290 |
Q |
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| T |
23150000 |
attcaaaacacttcaaatggccaaacaacaacaactttatcccaataacattgttctccattctacatccgacgatgttaa |
23149920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 299 - 438
Target Start/End: Complemental strand, 23149857 - 23149718
Alignment:
| Q |
299 |
caaggataaaaatatattatgtgaactctggttcaagcagtgcaaaactaaaactagataattcaagaacatgcgattacaacacatacacacacaatct |
398 |
Q |
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||||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23149857 |
caaggataaaaatatattatgggaaccctcgttcaaggagtgcaaaactaaaactagataattcaagaacatgcgattacaacacatacacacacaacct |
23149758 |
T |
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| Q |
399 |
ctggaattgcatggatatttgcacgggtataagcattcat |
438 |
Q |
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| T |
23149757 |
ttggaattgcatggatatttgcacgggtataagcattcat |
23149718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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