View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_high_16 (Length: 441)
Name: NF15978_high_16
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 33 - 424
Target Start/End: Original strand, 16734830 - 16735221
Alignment:
| Q |
33 |
cataggttgcataaaggaaagcaatgtgataggaagaggtggagcaggtgttgtgtacaaaggaacaatgccaaatggagatgaaattgctgtgaagaaa |
132 |
Q |
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| T |
16734830 |
cataggttgcataaaggaaagcaatgtgataggaagaggtggagcaggtgttgtgtacaaaggaacaatgccaaatggagatgaaattgctgtgaagaaa |
16734929 |
T |
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| Q |
133 |
ttgttaggaatcaacaaaggaaattcttcttctcatgccgataacggctttttagcagaaattaagacattaggtagaatcagacacaggtatattgtta |
232 |
Q |
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| T |
16734930 |
ttgttaggaatcaacaaaggaaattcttcttctcatgccgataacggcttttcagcagaaattaagacattaggtagaatcagacacaggtatattgtta |
16735029 |
T |
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| Q |
233 |
ggttggttgcattttgtacaaacaaagaaacaaatttgcttgtttatgattacatggaaaatggtagccttggtgaagttttgcatggaaaaagaggtga |
332 |
Q |
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| T |
16735030 |
ggttggttgcattttgtacaaacaaagaaacaaatttgcttgtttatgattacatggaaaatggtagccttggtgaagttttgcatggaaaaagaggtga |
16735129 |
T |
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| Q |
333 |
gtttttgaaatggaatgttaggttgaaaattgctgttgaagctgctaaaggactttgttatttgcatcatgattgttcacctttgatcattc |
424 |
Q |
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| T |
16735130 |
gtttttgaaatggaatgttaggttgaaaattgctgttgaagctgctaaaggactttgttatttgcatcatgattgttcacctttgatcattc |
16735221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 44 - 419
Target Start/End: Complemental strand, 39226375 - 39226009
Alignment:
| Q |
44 |
taaaggaaagcaatgtgataggaagaggtggagcaggtgttgtgtacaaaggaacaatgccaaatggagatgaaattgctgtgaagaaattgttaggaat |
143 |
Q |
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| T |
39226375 |
taaaggaaagtaacatcataggaagaggaggtgctggtgttgtatatggaggaacaatgccaaatggagaaaaagtagctgtgaaaaagttattaggaat |
39226276 |
T |
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| Q |
144 |
caacaaaggaaattcttcttctcatgccgataacggctttttagcagaaattaagacattaggtagaatcagacacaggtatattgttaggttggttgca |
243 |
Q |
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| T |
39226275 |
taacaaagg------ttgttcttatg---ataatggtttatcagctgaaataaaaacacttggtagaataaggcacagatacattgtgaagttgttagca |
39226185 |
T |
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| Q |
244 |
ttttgtacaaacaaagaaacaaatttgcttgtttatgattacatggaaaatggtagccttggtgaagttttgcatggaaaaagaggtgagtttttgaaat |
343 |
Q |
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| T |
39226184 |
ttttgttcaaatagagacactaatttgcttgtttatgagtacatgacaaatggtagtttaggtgaagtgttgcatgggaaaagaggggggtttcttgagt |
39226085 |
T |
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| Q |
344 |
ggaatgttaggttgaaaattgctgttgaagctgctaaaggactttgttatttgcatcatgattgttcacctttgat |
419 |
Q |
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| T |
39226084 |
gggatgttagggtgaaaatagcaactgaagctgctaaaggactttgctatttgcaccatgattgttgtcctttgat |
39226009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 26735913 - 26735979
Alignment:
| Q |
358 |
aaaattgctgttgaagctgctaaaggactttgttatttgcatcatgattgttcacctttgatcattc |
424 |
Q |
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| T |
26735913 |
aaaattgctgtggaagctgctaagggactttgctatttgcaccatgattgttcacctcttatcattc |
26735979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 414
Target Start/End: Complemental strand, 40404115 - 40404059
Alignment:
| Q |
358 |
aaaattgctgttgaagctgctaaaggactttgttatttgcatcatgattgttcacct |
414 |
Q |
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| T |
40404115 |
aaaattgctgtggaagctgcaaagggtctttgttatctacatcatgactgttcacct |
40404059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 408
Target Start/End: Original strand, 38868260 - 38868310
Alignment:
| Q |
358 |
aaaattgctgttgaagctgctaaaggactttgttatttgcatcatgattgt |
408 |
Q |
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| T |
38868260 |
aaaattgctgttgatgctgctgagggactttcttatttgcaccatgattgt |
38868310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 408
Target Start/End: Original strand, 38872169 - 38872219
Alignment:
| Q |
358 |
aaaattgctgttgaagctgctaaaggactttgttatttgcatcatgattgt |
408 |
Q |
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| T |
38872169 |
aaaattgctgttgatgctgttgagggactttcttatttgcatcatgattgt |
38872219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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