View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15978_high_20 (Length: 414)

Name: NF15978_high_20
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15978_high_20
NF15978_high_20
[»] scaffold0133 (4 HSPs)
scaffold0133 (263-403)||(9509-9649)
scaffold0133 (295-403)||(13857-13965)
scaffold0133 (83-269)||(9673-9879)
scaffold0133 (83-269)||(14012-14218)
[»] chr6 (2 HSPs)
chr6 (262-403)||(16782107-16782248)
chr6 (105-174)||(16782940-16783010)
[»] scaffold0256 (3 HSPs)
scaffold0256 (264-363)||(10169-10268)
scaffold0256 (83-267)||(10295-10496)
scaffold0256 (17-71)||(10544-10598)
[»] chr3 (2 HSPs)
chr3 (272-390)||(38938385-38938502)
chr3 (187-223)||(38938287-38938323)
[»] chr5 (1 HSPs)
chr5 (336-390)||(11983113-11983167)


Alignment Details
Target: scaffold0133 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 263 - 403
Target Start/End: Complemental strand, 9649 - 9509
Alignment:
Q  263 tttttccatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaacacatatttcatcttc 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9649 tttttctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttc 9550  T
Q  363 ctagaccaaagtcatatctaatccaaacaactttgattcat 403  Q
    ||||| |||| |||| || ||||||||||||||||||||||    
T  9549 ctagagcaaaatcatctccaatccaaacaactttgattcat 9509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 295 - 403
Target Start/End: Complemental strand, 13965 - 13857
Alignment:
Q  295 agaagaactacatccactgatttaatatataatctttgaaaacaaataacaacacatatttcatcttcctagaccaaagtcatatctaatccaaacaact 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| || |||||||||||||    
T  13965 agaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaacaact 13866  T
Q  395 ttgattcat 403  Q
    |||||||||    
T  13865 ttgattcat 13857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 83 - 269
Target Start/End: Complemental strand, 9879 - 9673
Alignment:
Q  83 cttgatccacttgcacttcaggtacacttgccaacttgaaatattaaataat---tagtattacaattatttggtattggattctctctgat-------- 171  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||| ||| ||||            
T  9879 cttgatccacttgcacttcaggtacact-gccaacttgaaatattaaataataattagtattacaattatttggtattggattttctttgatgaaatcta 9781  T
Q  172 ----------gaacaaataaacgggcatgatgttgtttcataagataagttttccaattttgnnnnnnnccctttcattgccatgtgccttcacaacttg 261  Q
              |||||||| |||| ||||||||||||||||||||||||||||||||||||||       ||||||||| ||||||||||||||  |||||    
T  9780 ggccacacaagaacaaatgaacgagcatgatgttgtttcataagataagttttccaattttgtttttttccctttcatggccatgtgccttcaacacttg 9681  T
Q  262 ttttttcc 269  Q
    ||||||||    
T  9680 ttttttcc 9673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 83 - 269
Target Start/End: Complemental strand, 14218 - 14012
Alignment:
Q  83 cttgatccacttgcacttcaggtacacttgccaacttgaaatattaaataat---tagtattacaattatttggtattggattctctctg---------- 169  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||              
T  14218 cttgatccacttgcacttcaggtacact-gccaacttgaaatattaaataataattagtattacaattatttggtattggattctctttgacgaaatcta 14120  T
Q  170 --------atgaacaaataaacgggcatgatgttgtttcataagataagttttccaattttgnnnnnnnccctttcattgccatgtgccttcacaacttg 261  Q
            | |||||||| ||||| ||||||||||||||||| |||||||||||||||||||       || |||||| |||||||||||||||||||||    
T  14119 ggccacacaagaacaaatgaacggtcatgatgttgtttcatatgataagttttccaattttgtttttttccttttcatggccatgtgccttcacaacttg 14020  T
Q  262 ttttttcc 269  Q
    ||||||||    
T  14019 ttttttcc 14012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 262 - 403
Target Start/End: Complemental strand, 16782248 - 16782107
Alignment:
Q  262 ttttttccatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaacacatatttcatctt 361  Q
    ||||||| |||||| ||||| || ||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  16782248 ttttttctatagcaaccaatattcacaagttgcagaaaaactacatccactgatttaatagataatctttgaaaacaaataacaactcatatttcatctt 16782149  T
Q  362 cctagaccaaagtcatatctaatccaaacaactttgattcat 403  Q
    |||||| ||||||||| ||||||| |||||||||||||||||    
T  16782148 cctagagcaaagtcatctctaatctaaacaactttgattcat 16782107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 16783010 - 16782940
Alignment:
Q  105 tacacttgccaacttgaaatat-taaataattagtattacaattatttggtattggattctctctgatgaa 174  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||  | ||||||||||||| ||||    
T  16783010 tacacttcccaacttgaaatatataaataattagtattactattatttgtgactggattctctctggtgaa 16782940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 264 - 363
Target Start/End: Complemental strand, 10268 - 10169
Alignment:
Q  264 ttttccatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaacacatatttcatcttcc 363  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10268 ttttctatagcagtcaattttgacatgttgcaaaagaactacatccactgatttaatatataatctttgaaaacaaataacaacgcatatttcatcttcc 10169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 83 - 267
Target Start/End: Complemental strand, 10496 - 10295
Alignment:
Q  83 cttgatccacttgcacttcaggtacacttgccaacttgaaatattaaataattagtattacaattatttggtattggattctctctgat----------- 171  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||               
T  10496 cttgctccacttgcacttgaggtacact-gccaacttgaaatattaaataattagtattacaattatatggtattggattctctttgatgaaatctaggc 10398  T
Q  172 -------gaacaaataaacgggcatgatgttgtttcataagataagttttccaattttgnnnnnnnccctttcattgccatgtgccttcacaacttgttt 264  Q
           |||||||| |||||||||||||||||| |||||||||||||||||||||||        || |||||| ||||||||||||||||||||||||    
T  10397 cacacaagaacaaatgaacgggcatgatgttgttacataagataagttttccaattttttttttttccttttcatggccatgtgccttcacaacttgttt 10298  T
Q  265 ttt 267  Q
    |||    
T  10297 ttt 10295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 10598 - 10544
Alignment:
Q  17 agaaaggatacctattattttgagataaacaattgtgcatgaaagtaatataata 71  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  10598 agaaaggatacctattattttgagataaacaatagtgcatgaaagtaacataata 10544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 272 - 390
Target Start/End: Original strand, 38938385 - 38938502
Alignment:
Q  272 agcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaacacatatttcatcttcctagaccaa 371  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||| |||||||||||||||||||||| |||    
T  38938385 agcagccaatattgacaagttgcagaagaactacatccactgatttaatagacaatctttgaaaaaaaataactacacatatttcatcttcctagagcaa 38938484  T
Q  372 agtcatatctaatccaaac 390  Q
    || ||| || |||||||||    
T  38938485 ag-catctccaatccaaac 38938502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 38938287 - 38938323
Alignment:
Q  187 catgatgttgtttcataagataagttttccaattttg 223  Q
    ||||||||||||||||| |||||||||||||||||||    
T  38938287 catgatgttgtttcatatgataagttttccaattttg 38938323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 11983113 - 11983167
Alignment:
Q  336 acaaataacaacacatatttcatcttcctagaccaaagtcatatctaatccaaac 390  Q
    |||||||| ||| |||||||||||||| |||| ||||||||| || |||||||||    
T  11983113 acaaataataacgcatatttcatcttcatagagcaaagtcatctccaatccaaac 11983167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University