View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15978_high_25 (Length: 384)
Name: NF15978_high_25
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_high_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 8590769 - 8590404
Alignment:
| Q |
1 |
tttgattcgtagtttttgtaagtatttgcttaggtaggatatatgatttttactcttcattaaactaaattttatacaatcagtagttgtagaaaatagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
8590769 |
tttgattcgtagtttttgtaagtatttgcttaggtaggatatacgatttttattcttcattaaactaaattttatacaatcagttgtggtagaaaatagt |
8590670 |
T |
|
| Q |
101 |
tattgttgatcggttttgtatatcatgtgttatgtcttcgttaaccttaataaatttttatggttccatccctgtcaccaacatctcaatgagaacgcag |
200 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
8590669 |
tattgttgatcgattttgtttatcacgtgttatgtcttcgctacccttaataaatttttatggttccattcctgtcatcaacatctcaatgagaacgcag |
8590570 |
T |
|
| Q |
201 |
aagagtnnnnnnnnnncatcttctatcatagtgctacaagcagccaacttaaattctccaatgcactatcacacaccacc-tcatatcaccacttaatgg |
299 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
8590569 |
aagagtacaaaaaaaacatcttctatcatagtgctacaagcagccaacttaaattctccaatgcactatcacacaccaccatcatataaccacttaatgg |
8590470 |
T |
|
| Q |
300 |
tacttggatgggccatgacttctctgatatcactaccccatttttcagtttaggcaacgacgcaaa |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
8590469 |
tacttggatgggccatgacttctctgatatcactacaccattattcagtttaggcaacgacgcaaa |
8590404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 45361633 - 45361532
Alignment:
| Q |
9 |
gtagtttttgtaagtatttgcttaggtaggatatatgatttttactcttcattaaactaaattttatacaatcagtagttgtagaaaatagttattgttg |
108 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||| |||||||| | |||||| |||||||||||||| ||| |||| |||||| ||||| ||||||||| |
|
|
| T |
45361633 |
gtagtttttgcaagtatttggtttggtaggatataagatttttatttttcattgaactaaattttatataattagtaattgtaggaaataattattgttg |
45361534 |
T |
|
| Q |
109 |
at |
110 |
Q |
| |
|
|| |
|
|
| T |
45361533 |
at |
45361532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 39212519 - 39212624
Alignment:
| Q |
1 |
tttgattcgtagtttttgtaagtatttgcttaggtaggatatatgatttttactcttcattaaactaaattttatacaatcagtagttgtagaaaatagt |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||| || | | ||||| || ||||| |||||||| |||||||||||||| |||||||| | | ||||||| || |
|
|
| T |
39212519 |
tttgattggtagtttttgtaagtgtttgttttgccggtatataagacttttattcttcatttaactaaattttatataatcagtaatcgcagaaaattgt |
39212618 |
T |
|
| Q |
101 |
tattgt |
106 |
Q |
| |
|
|||||| |
|
|
| T |
39212619 |
tattgt |
39212624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 31802438 - 31802335
Alignment:
| Q |
217 |
catcttctatcatagtgctacaagcagccaacttaaattctccaatgcactatcacacaccacc-tcatatcaccacttaatggtacttggatgggccat |
315 |
Q |
| |
|
||||||||| || ||||| |||| ||||||| |||| || ||||||||||||||||||||||| |||||| | | ||||||| ||||| |||| |||| |
|
|
| T |
31802438 |
catcttctaacaaggtgcttcaagaagccaacataaaatcaccaatgcactatcacacaccaccatcatattagctcttaatgatacttaaatggaccat |
31802339 |
T |
|
| Q |
316 |
gact |
319 |
Q |
| |
|
|||| |
|
|
| T |
31802338 |
gact |
31802335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 6864139 - 6864263
Alignment:
| Q |
1 |
tttgattcgtagtttttgtaagtatttgcttaggtaggatatatgatttttactcttcattaaactaaattttatacaatcagtagttgtagaaaatagt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||| | || | ||||| |||||||| |||||| | |||||||||||||| ||| ||| ||||||||| ||| |
|
|
| T |
6864139 |
tttgattggtagtttttgtaagtatttgccttggcaacatataagatttttattcttcacttaactaaattttatataattggtaactgtagaaaaaagt |
6864238 |
T |
|
| Q |
101 |
tattgttgatcggttttgtatatca |
125 |
Q |
| |
|
|| ||||||||| | |||| ||||| |
|
|
| T |
6864239 |
tactgttgatcgatgttgtttatca |
6864263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 4832974 - 4832938
Alignment:
| Q |
329 |
tcactaccccatttttcagtttaggcaacgacgcaaa |
365 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
4832974 |
tcactacaccatttttcattttaggcaacgacgcaaa |
4832938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University