View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15978_high_30 (Length: 368)

Name: NF15978_high_30
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15978_high_30
NF15978_high_30
[»] chr4 (29 HSPs)
chr4 (94-352)||(326968-327220)
chr4 (219-305)||(42540179-42540265)
chr4 (209-306)||(44833913-44834010)
chr4 (198-305)||(23780214-23780321)
chr4 (184-264)||(7672558-7672638)
chr4 (198-306)||(18740124-18740232)
chr4 (198-259)||(43364229-43364290)
chr4 (209-302)||(48141302-48141391)
chr4 (246-303)||(34214453-34214510)
chr4 (225-297)||(14126311-14126383)
chr4 (201-260)||(10381864-10381923)
chr4 (245-305)||(19747569-19747629)
chr4 (245-305)||(19792177-19792237)
chr4 (239-290)||(55149012-55149063)
chr4 (221-294)||(4485251-4485319)
chr4 (223-260)||(10395455-10395492)
chr4 (225-301)||(6147477-6147552)
chr4 (221-305)||(10334109-10334193)
chr4 (247-306)||(49761685-49761744)
chr4 (267-305)||(10395484-10395522)
chr4 (105-163)||(23780405-23780463)
chr4 (221-305)||(23689413-23689497)
chr4 (212-295)||(3257819-3257897)
chr4 (267-306)||(10381833-10381872)
chr4 (219-278)||(19677989-19678048)
chr4 (94-163)||(19677819-19677893)
chr4 (257-307)||(45628547-45628597)
chr4 (223-255)||(20678274-20678306)
chr4 (227-259)||(32896653-32896685)
[»] chr2 (10 HSPs)
chr2 (182-307)||(33382009-33382134)
chr2 (209-305)||(27081057-27081153)
chr2 (219-306)||(14108775-14108862)
chr2 (219-300)||(5722756-5722837)
chr2 (110-163)||(5722933-5722986)
chr2 (94-163)||(33381883-33381947)
chr2 (198-259)||(13783417-13783478)
chr2 (255-309)||(1484124-1484178)
chr2 (94-163)||(27080909-27080983)
chr2 (226-286)||(32971353-32971413)
[»] chr6 (13 HSPs)
chr6 (182-305)||(18271665-18271793)
chr6 (199-294)||(20836610-20836705)
chr6 (185-302)||(33427640-33427757)
chr6 (229-305)||(12127251-12127327)
chr6 (223-308)||(14569912-14569997)
chr6 (190-260)||(9619557-9619627)
chr6 (267-305)||(30369538-30369576)
chr6 (262-305)||(9082156-9082199)
chr6 (116-163)||(20836794-20836841)
chr6 (220-275)||(26403235-26403290)
chr6 (229-307)||(20116408-20116486)
chr6 (224-302)||(12852267-12852345)
chr6 (129-163)||(18271854-18271888)
[»] chr7 (20 HSPs)
chr7 (182-305)||(27305494-27305617)
chr7 (219-302)||(10595922-10596005)
chr7 (198-305)||(19367098-19367200)
chr7 (198-305)||(43341017-43341124)
chr7 (208-306)||(4922692-4922790)
chr7 (219-301)||(23777021-23777103)
chr7 (198-272)||(23803055-23803129)
chr7 (209-305)||(16813809-16813901)
chr7 (221-305)||(31305189-31305273)
chr7 (229-305)||(35912175-35912251)
chr7 (219-268)||(10596089-10596138)
chr7 (94-162)||(4922548-4922611)
chr7 (220-301)||(42731054-42731125)
chr7 (182-305)||(23167911-23168030)
chr7 (121-160)||(10596070-10596109)
chr7 (121-160)||(10596203-10596242)
chr7 (239-302)||(45852502-45852565)
chr7 (223-305)||(43951273-43951355)
chr7 (129-162)||(19367271-19367304)
chr7 (231-292)||(20335639-20335700)
[»] chr3 (17 HSPs)
chr3 (208-307)||(36436036-36436135)
chr3 (198-305)||(55216817-55216919)
chr3 (198-305)||(8473238-8473340)
chr3 (220-279)||(37152706-37152765)
chr3 (197-305)||(25653530-25653639)
chr3 (219-302)||(40654096-40654174)
chr3 (198-264)||(29630149-29630215)
chr3 (182-260)||(33186285-33186367)
chr3 (226-305)||(54801612-54801686)
chr3 (101-163)||(29630049-29630111)
chr3 (230-302)||(29596887-29596959)
chr3 (198-301)||(11750023-11750126)
chr3 (220-305)||(867546-867626)
chr3 (198-305)||(26662040-26662137)
chr3 (129-163)||(33186189-33186223)
chr3 (225-305)||(34607318-34607397)
chr3 (131-163)||(40654233-40654265)
[»] chr1 (16 HSPs)
chr1 (220-307)||(22786645-22786732)
chr1 (226-302)||(34821605-34821680)
chr1 (224-307)||(5993536-5993619)
chr1 (199-281)||(44011747-44011829)
chr1 (219-282)||(32567090-32567153)
chr1 (199-264)||(85712-85777)
chr1 (218-295)||(8812386-8812463)
chr1 (261-305)||(45376421-45376465)
chr1 (212-297)||(42254266-42254346)
chr1 (226-313)||(52247466-52247548)
chr1 (220-294)||(47756453-47756527)
chr1 (225-285)||(28283181-28283241)
chr1 (116-163)||(47930895-47930942)
chr1 (129-163)||(8812528-8812562)
chr1 (229-301)||(15661573-15661640)
chr1 (241-305)||(39549648-39549711)
[»] chr5 (18 HSPs)
chr5 (198-302)||(5131302-5131406)
chr5 (215-305)||(19914351-19914431)
chr5 (219-302)||(22920845-22920923)
chr5 (219-305)||(43259887-43259968)
chr5 (223-282)||(10476566-10476625)
chr5 (219-295)||(27946869-27946945)
chr5 (226-306)||(34071392-34071472)
chr5 (223-300)||(29452330-29452407)
chr5 (219-305)||(5791776-5791862)
chr5 (105-163)||(19914485-19914543)
chr5 (231-305)||(3883734-3883808)
chr5 (219-305)||(43399355-43399436)
chr5 (220-305)||(6644865-6644949)
chr5 (221-282)||(16489133-16489194)
chr5 (218-271)||(27514527-27514580)
chr5 (129-163)||(27514402-27514436)
chr5 (111-157)||(29445253-29445299)
chr5 (261-302)||(11672315-11672356)
[»] chr8 (12 HSPs)
chr8 (198-305)||(30595426-30595523)
chr8 (208-307)||(42651389-42651493)
chr8 (223-305)||(35699690-35699767)
chr8 (220-305)||(3639863-3639943)
chr8 (220-305)||(18605171-18605256)
chr8 (262-306)||(3867680-3867724)
chr8 (229-305)||(11781582-11781658)
chr8 (129-163)||(387723-387757)
chr8 (121-163)||(30595575-30595617)
chr8 (205-306)||(42326690-42326788)
chr8 (225-302)||(2259758-2259830)
chr8 (114-163)||(18605352-18605401)
[»] scaffold0024 (2 HSPs)
scaffold0024 (229-307)||(60031-60104)
scaffold0024 (108-163)||(60182-60232)
[»] scaffold0198 (1 HSPs)
scaffold0198 (251-306)||(10229-10284)
[»] scaffold0086 (1 HSPs)
scaffold0086 (219-260)||(20692-20733)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 94 - 352
Target Start/End: Complemental strand, 327220 - 326968
Alignment:
Q  94 agttcaattcaaaacagttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcatttgnnnnnnnnnnnnnnnnnncagttcggtttg 193  Q
    |||||| |||||||||||||||      |||||||||||||||| |||||||||||||||||||||||||                  ||||||||||||    
T  327220 agttcagttcaaaacagttcag------acagtttagttcagttttgtaactaaaattcaatttcatttgtttttttcatatttttttcagttcggtttg 327127  T
Q  194 aaatagttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaacca 293  Q
    ||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||    
T  327126 aaacagttcaatttaaaatgcaaacagttcagttcagttattttaaatttagcaaacaattcagtttagttcggttcatttttcatcccgaactcaacca 327027  T
Q  294 tgcccacccctaatcactaccacaaaataatttaaattatggtattaattaggcttcat 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327026 tgcccacccctaatcactaccacaaaataatttaaattatggtattaattaggcttcat 326968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 42540265 - 42540179
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||||||||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  42540265 agttcagttcaattattttaaatttagcaaacaattcagttcagttcggttctgttttcatctcgaactgaaccatgcccaccccta 42540179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 209 - 306
Target Start/End: Complemental strand, 44834010 - 44833913
Alignment:
Q  209 aaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaa 306  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||| |||  ||||||||| |||||||||||||| ||||||| |||||||||||    
T  44834010 aaatacaaacagttcagttcagttattttaaatttagcaaacagttcaatttgattcggttcaattttcatcccgaaccgaaccatacccacccctaa 44833913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 23780321 - 23780214
Alignment:
Q  198 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 297  Q
    |||||| || ||||| |||| ||||||||||| |||||||| |||||||||||| || |||| | ||||||||||||||||||||||||||||||||| |    
T  23780321 agttcagttcgaaatacaaacagttcagttcaattattttagatttagcaaacaattaagttcaattcggttcagttttcatcccgaactgaaccatgtc 23780222  T
Q  298 caccccta 305  Q
    ||||||||    
T  23780221 caccccta 23780214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 7672638 - 7672558
Alignment:
Q  184 gttcggtttgaaatagttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagtt 264  Q
    ||||||||||||| ||||||||| |||||||||| | || |||||||||||||||||||||||||||||||| ||||||||    
T  7672638 gttcggtttgaaacagttcaattcgaaatgcaaacaatttagttcagttattttaaatttagcaaacagttctgtttagtt 7672558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 306
Target Start/End: Original strand, 18740124 - 18740232
Alignment:
Q  198 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 297  Q
    |||||| || |||||||||| | ||||||||  ||||||||||||||||||| |||||| |||  |||||||||||||| ||||| || ||||||||| |    
T  18740124 agttcagttcgaaatgcaaacaattcagttctattattttaaatttagcaaatagttcattttgattcggttcagtttttatcccaaattgaaccatgtc 18740223  T
Q  298 cacccctaa 306  Q
    |||||||||    
T  18740224 cacccctaa 18740232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 43364229 - 43364290
Alignment:
Q  198 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtt 259  Q
    ||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43364229 agttcgattcgaaatgcaaacagttcagttcagttattttaaatttagcaaacagttcagtt 43364290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 302
Target Start/End: Original strand, 48141302 - 48141391
Alignment:
Q  209 aaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 302  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||  ||| ||||||||    |||||| ||||| |||||||||||||||    
T  48141302 aaatgcaaacaattcagttcagttattttaaatttagcaaacagttcaccttacttcggttc----ttcatctcgaaccgaaccatgcccaccc 48141391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 34214510 - 34214453
Alignment:
Q  246 caaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccc 303  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  34214510 caaacaattcagtttagttcggttcagttttcatcccgaaccaaaccatgcccacccc 34214453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 14126383 - 14126311
Alignment:
Q  225 gttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 297  Q
    |||||||| ||||||||||||||||||||| ||||  ||||| ||||||||||||| | ||||||||||||||    
T  14126383 gttcagtttttttaaatttagcaaacagttgagttcggttcgattcagttttcatctcaaactgaaccatgcc 14126311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 10381923 - 10381864
Alignment:
Q  201 tcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagttt 260  Q
    |||||| |||||||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  10381923 tcaattcgaaatgcaaccagttcagttcatttattttaaatttagcaaacagttcagttt 10381864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 19747569 - 19747629
Alignment:
Q  245 gcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    |||||||||||||||| |||||||| |||||||||||| |  |||||||||||||||||||    
T  19747569 gcaaacagttcagtttggttcggtttagttttcatcccaatttgaaccatgcccaccccta 19747629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 19792237 - 19792177
Alignment:
Q  245 gcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    |||||||||||||||| |||||||| |||||||||||| |  |||||||||||||||||||    
T  19792237 gcaaacagttcagtttggttcggtttagttttcatcccaatttgaaccatgcccaccccta 19792177  T

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Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 55149063 - 55149012
Alignment:
Q  239 aatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaa 290  Q
    |||||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  55149063 aatttagcaaacagttaagttcagttcggttcagttttcatcccaaactgaa 55149012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 4485319 - 4485251
Alignment:
Q  221 ttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccat 294  Q
    |||| |||||||||||||||| ||||||||| |||||||     |||||||||||| |||||||||||||||||    
T  4485319 ttcatttcagttattttaaatctagcaaacaattcagtt-----cggttcagtttttatcccgaactgaaccat 4485251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 10395455 - 10395492
Alignment:
Q  223 cagttcagttattttaaatttagcaaacagttcagttt 260  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10395455 cagttcagttattttaaatttagcaaacagttcagttt 10395492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 6147477 - 6147552
Alignment:
Q  225 gttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacc 301  Q
    |||||||||||| ||||||| |||| |||||| || |||| ||||| |||||||||||||||  |||||||||||||    
T  6147477 gttcagttattt-aaatttatcaaatagttcaattcagtttggttccgttttcatcccgaaccaaaccatgcccacc 6147552  T

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Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 10334193 - 10334109
Alignment:
Q  221 ttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||||||| ||||||| |||||| |||||| |||||||  ||||  |||||||||||| || ||| ||||||||| ||||||||    
T  10334193 ttcagttcaattattttgaatttaacaaacaattcagttcggttcaattcagttttcattccaaacagaaccatgcacaccccta 10334109  T

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Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 49761744 - 49761685
Alignment:
Q  247 aaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaa 306  Q
    |||||||| |||| ||||||||||||||||||| ||||||| |||||| || ||||||||    
T  49761744 aaacagtttagttcagttcggttcagttttcattccgaacttaaccatacctacccctaa 49761685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 10395484 - 10395522
Alignment:
Q  267 gttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  10395484 gttcagttttcatcacgaactgaaccatgcccaccccta 10395522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 23780463 - 23780405
Alignment:
Q  105 aaacagttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 163  Q
    |||||||||||||| ||||| || | ||||||| ||||||| |||||||||||||||||    
T  23780463 aaacagttcagttcagaacaattcaattcagttatgtaactcaaattcaatttcatttg 23780405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 305
Target Start/End: Original strand, 23689413 - 23689497
Alignment:
Q  221 ttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    |||| |||| |||||||| |||||||||||| |||| |||  ||| ||| ||||||||||| ||||  || ||||||||||||||    
T  23689413 ttcaattcatttattttagatttagcaaacaattcattttgcttccgtttagttttcatcctgaacccaatcatgcccaccccta 23689497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 3257819 - 3257897
Alignment:
Q  212 tgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatg 295  Q
    |||||| ||||||||||| ||||| |||||||| ||||||||||||||     || |||| ||||||||||||||  |||||||    
T  3257819 tgcaaacagttcagttcaattattataaatttaccaaacagttcagtt-----cgattcaattttcatcccgaaccaaaccatg 3257897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 10381872 - 10381833
Alignment:
Q  267 gttcagttttcatcccgaactgaaccatgcccacccctaa 306  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  10381872 gttcagttttcattccgaactgaaccatgcccacctctaa 10381833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 19677989 - 19678048
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttca 278  Q
    |||||| || ||||||||||||||||||||| | |||||||||||| | |||| ||||||    
T  19677989 agttcattttagttattttaaatttagcaaatatttcagtttagtttgattcacttttca 19678048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 19677819 - 19677893
Alignment:
Q  94 agttcaattcaaaacagttc-----agttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 163  Q
    ||||| ||||||||||||||     |||||||||||||| |||||| ||| ||||||||||||| ||||| ||||    
T  19677819 agttcgattcaaaacagttcggttaagttcggaacagttcagttcaattcggtaactaaaattcgatttcttttg 19677893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 45628597 - 45628547
Alignment:
Q  257 gtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaat 307  Q
    |||| ||| ||||||||| ||||||||||||||||||| |||||| |||||    
T  45628597 gtttggtttggttcagttctcatcccgaactgaaccatccccacctctaat 45628547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 20678306 - 20678274
Alignment:
Q  223 cagttcagttattttaaatttagcaaacagttc 255  Q
    ||||||| |||||||||||||||||||||||||    
T  20678306 cagttcaattattttaaatttagcaaacagttc 20678274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 32896653 - 32896685
Alignment:
Q  227 tcagttattttaaatttagcaaacagttcagtt 259  Q
    |||||||| ||||||||||||||||||||||||    
T  32896653 tcagttatcttaaatttagcaaacagttcagtt 32896685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 182 - 307
Target Start/End: Original strand, 33382009 - 33382134
Alignment:
Q  182 cagttcggtttgaaatagttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcc 281  Q
    ||||||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||| |||||||||| ||||||| |||||||||||||||| ||||    
T  33382009 cagttcggtttgaaacagttcaattcgaaatgcaaacagttaagttcagttattttaaagttagcaaacaattcagttcagttcggttcagtttttatcc 33382108  T
Q  282 cgaactgaaccatgcccacccctaat 307  Q
    |||| |||||||||||||||||||||    
T  33382109 cgaattgaaccatgcccacccctaat 33382134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 27081057 - 27081153
Alignment:
Q  209 aaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||    
T  27081057 aaatgcaaacagttcaattcagttattttaaatttagcaaacagttcagttcagttcggttcagttttcattccgaactgaaccgtgcccaccccta 27081153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 306
Target Start/End: Original strand, 14108775 - 14108862
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaa 306  Q
    |||||| |||| ||||||||||||||  ||||||||||||| ||||||||||||||||||||  |||||||||||||  |||||||||    
T  14108775 agttcaattcaattattttaaatttaataaacagttcagttcagttcggttcagttttcatcttgaactgaaccatgttcacccctaa 14108862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 5722837 - 5722756
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccac 300  Q
    |||||| |||||||||||||||||||||||| | |||| ||| |||||||||| |||||||||| ||| |||||||| ||||    
T  5722837 agttcaattcagttattttaaatttagcaaataattcaatttggttcggttcacttttcatcccaaaccgaaccatgtccac 5722756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 5722986 - 5722933
Alignment:
Q  110 gttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 163  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||| ||||    
T  5722986 gttcagttcggaacagttcagttcagttcggtaactaaaattcaatttcgtttg 5722933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 33381883 - 33381947
Alignment:
Q  94 agttcaattcaaaacagttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 163  Q
    |||||||||| |||||||||||||||||||     |||||||||| ||||||||||||||||||||||||    
T  33381883 agttcaattcgaaacagttcagttcggaac-----agttcagttcggtaactaaaattcaatttcatttg 33381947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 13783417 - 13783478
Alignment:
Q  198 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtt 259  Q
    |||||||||| ||||||||| | ||||||| |||||||||||||||| |||||| |||||||    
T  13783417 agttcaatttaaaatgcaaacaattcagtttagttattttaaatttaacaaacaattcagtt 13783478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 1484124 - 1484178
Alignment:
Q  255 cagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaatca 309  Q
    |||| ||||| ||||||||||||||||||||| ||||||||| ||| ||||||||    
T  1484124 cagtctagtttggttcagttttcatcccgaaccgaaccatgctcactcctaatca 1484178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 27080909 - 27080983
Alignment:
Q  94 agttcaattcaaaacagttcagttcgg-----aacagtttagttcagttctgtaactaaaattcaatttcatttg 163  Q
    |||||| |||||||||||||||||||      ||||||| |||||||||  ||||||||||||||||||||||||    
T  27080909 agttcagttcaaaacagttcagttcgattcgaaacagttcagttcagtttggtaactaaaattcaatttcatttg 27080983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 32971353 - 32971413
Alignment:
Q  226 ttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaac 286  Q
    |||| |||||||||||||| ||||||| |||||| |  || ||| ||||||||||||||||    
T  32971353 ttcaattattttaaatttaccaaacagctcagttcaactcagtttagttttcatcccgaac 32971413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 182 - 305
Target Start/End: Complemental strand, 18271793 - 18271665
Alignment:
Q  182 cagttcggtttgaaatagttca-----atttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagtttt 276  Q
    ||||||||||||||| ||||||      ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  18271793 cagttcggtttgaaacagttcagtttggtttgaaatgcaaacagttcagttcagttattttaaatttagcacacagttcagttcagttcggttcagtttt 18271694  T
Q  277 catcccgaactgaaccatgcccaccccta 305  Q
    ||||| |||||||||||||||||||||||    
T  18271693 catccagaactgaaccatgcccaccccta 18271665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 199 - 294
Target Start/End: Complemental strand, 20836705 - 20836610
Alignment:
Q  199 gttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccat 294  Q
    ||||| || |||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  20836705 gttcagttcgaaatgcaaacagttcagttcagttattttagatttagcaaacagtttagttcagttcggttcagttttcatcccgaactgaaccat 20836610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 302
Target Start/End: Complemental strand, 33427757 - 33427640
Alignment:
Q  185 ttcggtttgaaatagttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccga 284  Q
    |||| ||||||| |||||| ||  ||||||||| |||||| ||||||||||||||||||| |||| | ||||||||||||||||||||||||||| ||||    
T  33427757 ttcgatttgaaacagttcagttcaaaatgcaaacagttcaattcagttattttaaatttaacaaataattcagtttagttcggttcagttttcattccga 33427658  T
Q  285 actgaaccatgcccaccc 302  Q
    ||||||| ||| ||||||    
T  33427657 actgaacaatgtccaccc 33427640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 12127327 - 12127251
Alignment:
Q  229 agttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||| ||||||||||    
T  12127327 agttattttgaatttcgcaaacagttcagtttagttcggttaagttttcatcccgaaccaaaccatacccaccccta 12127251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 308
Target Start/End: Original strand, 14569912 - 14569997
Alignment:
Q  223 cagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaatc 308  Q
    |||||||||||||||||| |||  |||||||| |||||| || | |||||||||||||| ||| |||||||||| || ||||||||    
T  14569912 cagttcagttattttaaacttaataaacagtttagtttaatttgattcagttttcatcctgaattgaaccatgcacatccctaatc 14569997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 9619557 - 9619627
Alignment:
Q  190 tttgaaatagttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagttt 260  Q
    ||||||| |||||| ||  ||||||||| ||||| |||||||||||||||||||  |||||||||||||||    
T  9619557 tttgaaacagttcagttcaaaatgcaaacagttcggttcagttattttaaatttgacaaacagttcagttt 9619627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 30369576 - 30369538
Alignment:
Q  267 gttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30369576 gttcagttttcatcccgaactgaaccatgcccaccccta 30369538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 9082156 - 9082199
Alignment:
Q  262 gttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    |||||||| |||||||||||||||| ||||||||||||||||||    
T  9082156 gttcggtttagttttcatcccgaaccgaaccatgcccaccccta 9082199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 20836841 - 20836794
Alignment:
Q  116 ttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 163  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||    
T  20836841 ttcgaaacagttcagttcagttcggtaactaaaattcaatttcatttg 20836794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 26403290 - 26403235
Alignment:
Q  220 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttt 275  Q
    ||||| ||||||||||||||||||| |||||||| ||||| |||||||||| ||||    
T  26403290 gttcaattcagttattttaaatttatcaaacagtccagttcagttcggttcggttt 26403235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 20116408 - 20116486
Alignment:
Q  229 agttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaat 307  Q
    |||||||||||||| | ||||||||| ||||| ||| | |||| |||||||||||||  || ||||| |||||||||||    
T  20116408 agttattttaaattaaacaaacagtttagtttggttagtttcaattttcatcccgaatcgatccatgtccacccctaat 20116486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 12852267 - 12852345
Alignment:
Q  224 agttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 302  Q
    |||| |||| ||||||||||| |||||| || || |  ||||||||||||||||||||| ||| |||| ||| ||||||    
T  12852267 agtttagttgttttaaatttaacaaacaatttagatcggttcggttcagttttcatcccaaaccgaacaatgtccaccc 12852345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 18271888 - 18271854
Alignment:
Q  129 agttcagttctgtaactaaaattcaatttcatttg 163  Q
    |||||||||| ||||||||||||||||||||||||    
T  18271888 agttcagttcagtaactaaaattcaatttcatttg 18271854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 182 - 305
Target Start/End: Complemental strand, 27305617 - 27305494
Alignment:
Q  182 cagttcggtttgaaatagttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcc 281  Q
    ||||||||||||||| |||||||||  |||||| || ||||||||| ||||||||||||||||||||||| | ||||||  |||||||||||||||||||    
T  27305617 cagttcggtttgaaacagttcaattcaaaatgctaacagttcagtttagttattttaaatttagcaaacaatgcagtttgattcggttcagttttcatcc 27305518  T
Q  282 cgaactgaaccatgcccaccccta 305  Q
     |||| |||||||| |||||||||    
T  27305517 tgaaccgaaccatggccaccccta 27305494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 10596005 - 10595922
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 302  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||| ||||||    
T  10596005 agttcagttcagttattttaaatttagcaaacagttcagttcagttcggtttagttttcatcccaaactgaaccatgtccaccc 10595922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 19367200 - 19367098
Alignment:
Q  198 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 297  Q
    |||||| || ||||| |||| |||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||||||||||||||    
T  19367200 agttcagttcgaaatacaaacagttcagttcagttattttaaatttagcaaacagttcagtt-----cgattcagttttcatcccgaactgaaccatgcc 19367106  T
Q  298 caccccta 305  Q
    ||||||||    
T  19367105 caccccta 19367098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 43341124 - 43341017
Alignment:
Q  198 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 297  Q
    |||||| || ||||||||||  ||| ||||||||||||||||||||| |||||| ||||||||| || ||||||||||||||||||||||||||||| ||    
T  43341124 agttcagttcgaaatgcaaacggtttagttcagttattttaaatttatcaaacaattcagtttaatttggttcagttttcatcccgaactgaaccattcc 43341025  T
Q  298 caccccta 305  Q
    || |||||    
T  43341024 catcccta 43341017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 208 - 306
Target Start/End: Original strand, 4922692 - 4922790
Alignment:
Q  208 gaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaa 306  Q
    |||||| |||||||| |||||||||||||||||||||||||||| ||||||| |||| || |||||||| ||||| |||||||||||| ||||||||||    
T  4922692 gaaatgtaaatagtttagttcagttattttaaatttagcaaacaattcagttcagtttggatcagtttttatcccaaactgaaccatgtccacccctaa 4922790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 219 - 301
Target Start/End: Complemental strand, 23777103 - 23777021
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacc 301  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |  ||||||||||||||||||||    
T  23777103 agttcagttcaattattttaaatttagcaaacagttcagtttagttcgattcagttttcgtttcgaactgaaccatgcccacc 23777021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 23803129 - 23803055
Alignment:
Q  198 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcag 272  Q
    ||||||||| |||||| ||| ||||||||||| ||||||||||||||||||||| |||||||| |||||||||||    
T  23803129 agttcaattcgaaatgtaaacagttcagttcaattattttaaatttagcaaacaattcagtttggttcggttcag 23803055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 16813809 - 16813901
Alignment:
Q  209 aaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcag-ttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||     |||||||||||| |||||||||||||||||| |||  |||||||||    
T  16813809 aaatgcaaacagttctgttcagttattttaaatttagcaaacagttc-----agttcggttcagtttttcatcccgaactgaatcatatccaccccta 16813901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 31305273 - 31305189
Alignment:
Q  221 ttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||||||| ||||||||||||||| |||||||||| ||  |||||||||| ||||||||||||||  |||||| ||||||||||    
T  31305273 ttcagttcaattattttaaatttagtaaacagttcacttctgttcggttcatttttcatcccgaaccaaaccatacccaccccta 31305189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 35912175 - 35912251
Alignment:
Q  229 agttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||||||||||||||  ||||| |||||||| |||||||| |||||||||  ||||||||||||||||||||||||    
T  35912175 agttattttaaatttaaaaaacaattcagtttggttcggtttagttttcatttcgaactgaaccatgcccaccccta 35912251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 10596138 - 10596089
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggt 268  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10596138 agttcagttcagttattttaaatttagcaaacagttcagttcagttcggt 10596089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 4922548 - 4922611
Alignment:
Q  94 agttcaattcaaaacagttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcattt 162  Q
    |||||||||||||||||||||||||| ||      |||||||||| |||||||||||||||||||||||    
T  4922548 agttcaattcaaaacagttcagttcgaaa-----aagttcagttcggtaactaaaattcaatttcattt 4922611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 42731125 - 42731054
Alignment:
Q  220 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacc 301  Q
    |||||||| |||| ||||||||||||||||||||||||||          ||||||||||||||||||||||||| ||||||    
T  42731125 gttcagttgagttcttttaaatttagcaaacagttcagtt----------cagttttcatcccgaactgaaccatacccacc 42731054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 305
Target Start/End: Original strand, 23167911 - 23168030
Alignment:
Q  182 cagttcggtttgaaatagttcaatttgaaatgcaaatagttcagttcagttattttaaattt-agcaaacagttcagtttagttcggttcagttttcatc 280  Q
    |||||||||||| |  ||||||  | |||||||||| ||| | ||| |||||||||| |||| |||||||| ||||| |     ||||||||||||||||    
T  23167911 cagttcggtttggaccagttcagatcgaaatgcaaacagtgccgtttagttattttagattttagcaaacaattcaggt-----cggttcagttttcatc 23168005  T
Q  281 ccgaactgaaccatgcccaccccta 305  Q
      || ||||||||||||||||||||    
T  23168006 ttgagctgaaccatgcccaccccta 23168030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 10596109 - 10596070
Alignment:
Q  121 aacagtttagttcagttctgtaactaaaattcaatttcat 160  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  10596109 aacagttcagttcagttcggtaactaaaattcaatttcat 10596070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 10596242 - 10596203
Alignment:
Q  121 aacagtttagttcagttctgtaactaaaattcaatttcat 160  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  10596242 aacagttcagttcagttcggtaactaaaattcaatttcat 10596203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 45852502 - 45852565
Alignment:
Q  239 aatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 302  Q
    ||||||||||||| || |||||| |||| |||| ||||||||||||||  |||||| |||||||    
T  45852502 aatttagcaaacaatttagtttaattcgattcaattttcatcccgaaccaaaccatacccaccc 45852565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 43951355 - 43951273
Alignment:
Q  223 cagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||||| ||||||||||||||||||||| || |||| ||||   |||| |||||| ||| || |||| |||| |||||||||    
T  43951355 cagttcaattattttaaatttagcaaacaatttagttcagtttaattcaattttcaccccaaattgaatcatgtccaccccta 43951273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 19367304 - 19367271
Alignment:
Q  129 agttcagttctgtaactaaaattcaatttcattt 162  Q
    |||||||||| |||||||||||||||||||||||    
T  19367304 agttcagttcggtaactaaaattcaatttcattt 19367271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 20335700 - 20335639
Alignment:
Q  231 ttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaacc 292  Q
    |||||||||||||| ||||||||||| |   ||||  ||||||||||||||| |||||||||    
T  20335700 ttattttaaatttatcaaacagttcaatacggttcaattcagttttcatcccaaactgaacc 20335639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 36436135 - 36436036
Alignment:
Q  208 gaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaat 307  Q
    |||||| ||| |||||| || |||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| |||||||    
T  36436135 gaaatggaaacagttcaatttagttattttaaatttagcaaacagttcaatttggttcggttctgttttcatcccgaactgaaccatgcccatccctaat 36436036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 55216817 - 55216919
Alignment:
Q  198 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 297  Q
    |||||| || |||||||||| |||||||||||||||||||||||||| |||| |||||     ||||| |||||||||||||||| || |||||||||||    
T  55216817 agttcagttcgaaatgcaaacagttcagttcagttattttaaatttaacaaatagttc-----agttcagttcagttttcatccctaattgaaccatgcc 55216911  T
Q  298 caccccta 305  Q
    ||||||||    
T  55216912 caccccta 55216919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 8473238 - 8473340
Alignment:
Q  198 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 297  Q
    |||||||||  ||||||||| ||||||||||||||| |||| ||||||||||||||||||||     || |||||||||||||| |||||||||||||      
T  8473238 agttcaattcaaaatgcaaagagttcagttcagttagtttagatttagcaaacagttcagtt-----cgattcagttttcatcctgaactgaaccatgtt 8473332  T
Q  298 caccccta 305  Q
    ||||||||    
T  8473333 caccccta 8473340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 37152706 - 37152765
Alignment:
Q  220 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcat 279  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  37152706 gttcagttcagttattttaaatttagcaaacagttcaatttagttcggttcaattttcat 37152765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 305
Target Start/End: Original strand, 25653530 - 25653639
Alignment:
Q  197 tagttcaatttgaaatgcaaatagttcagttcagttatttt-aaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatg 295  Q
    ||||||| ||| ||||||||| ||| |  |||||||||||| ||||||| ||||||||| ||||   |||||||||||||||||||||||| || |||||    
T  25653530 tagttcagtttaaaatgcaaacagtacgattcagttatttttaaatttatcaaacagtttagttcgattcggttcagttttcatcccgaaccgagccatg 25653629  T
Q  296 cccaccccta 305  Q
    ||||||||||    
T  25653630 cccaccccta 25653639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 40654174 - 40654096
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 302  Q
    |||||||||||||||||||||||||| ||||||||||     |||||||| ||||||| |||||||||||||||||| ||||||    
T  40654174 agttcagttcagttattttaaatttaacaaacagttc-----agttcggtacagtttttatcccgaactgaaccatgaccaccc 40654096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 29630149 - 29630215
Alignment:
Q  198 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagtt 264  Q
    |||||| || |||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  29630149 agttcagttcgaaatgcaaacagttcagttcagttatttcaaatttagcaaacagttcagttcagtt 29630215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 33186285 - 33186367
Alignment:
Q  182 cagttcggtttgaaatagttcaatt-----tgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagttt 260  Q
    ||||||||||||||| |||||||||     ||||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  33186285 cagttcggtttgaaacagttcaattcagtttgaaatgcaac-agttcagttcagttattttaaatttaacaaacagttcagttt 33186367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 54801686 - 54801612
Alignment:
Q  226 ttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    |||| ||||||||||||||||||||||||     || |||||||||||||||||||| |||||||||||| |||||||||    
T  54801686 ttcaattattttaaatttagcaaacagtt-----taattcggttcagttttcatcccaaactgaaccatgtccaccccta 54801612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 29630049 - 29630111
Alignment:
Q  101 ttcaaaacagttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 163  Q
    |||||||||||||||||| ||| |||| |||||||||| | ||||||||||||||||||||||    
T  29630049 ttcaaaacagttcagttcagaatagttcagttcagttcgggaactaaaattcaatttcatttg 29630111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 29596959 - 29596887
Alignment:
Q  230 gttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 302  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||||||||  | |||  ||||||||||||||    
T  29596959 gttattttgaatttagtaaacagttcagtttggttcggttcagttttcatttcaaaccaaaccatgcccaccc 29596887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 301
Target Start/End: Original strand, 11750023 - 11750126
Alignment:
Q  198 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 297  Q
    ||||||||| ||||||||||| |||  | |||||||||||||||||| ||||||||||||||    ||| || ||||||| |||||| || |||||| ||    
T  11750023 agttcaattcgaaatgcaaatggttatgatcagttattttaaatttatcaaacagttcagttcgagtcgatttagttttcgtcccgatctaaaccatacc 11750122  T
Q  298 cacc 301  Q
    ||||    
T  11750123 cacc 11750126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 867546 - 867626
Alignment:
Q  220 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||||||||||||||||||||||| |||||||||| ||||     |||||| ||||||||| ||||  ||| |||||||||||||    
T  867546 gttcagttcagttattttaaatttaccaaacagttcggttt-----ggttcaattttcatccggaaccaaactatgcccaccccta 867626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 198 - 305
Target Start/End: Original strand, 26662040 - 26662137
Alignment:
Q  198 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 297  Q
    |||||| || |||||||||| ||||||||| |||||||||||||||||||| |          | || ||||||||||||||||| ||||||||||||||    
T  26662040 agttcagttcgaaatgcaaacagttcagtttagttattttaaatttagcaagc----------aatttggttcagttttcatcccaaactgaaccatgcc 26662129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 33186189 - 33186223
Alignment:
Q  129 agttcagttctgtaactaaaattcaatttcatttg 163  Q
    |||||||||| ||||||||||||||||||||||||    
T  33186189 agttcagttcggtaactaaaattcaatttcatttg 33186223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 34607397 - 34607318
Alignment:
Q  225 gttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    |||||||| |||| ||||||||||||| || ||||| |||||| ||| |||||||| || ||| ||| ||| |||||||||    
T  34607397 gttcagtttttttgaatttagcaaacaatttagtttggttcgg-tcaattttcatctcggactaaacaatgtccaccccta 34607318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 40654265 - 40654233
Alignment:
Q  131 ttcagttctgtaactaaaattcaatttcatttg 163  Q
    |||||||| ||||||||||||||||||||||||    
T  40654265 ttcagttcggtaactaaaattcaatttcatttg 40654233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 22786645 - 22786732
Alignment:
Q  220 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaat 307  Q
    |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  22786645 gttcagttcaattattttaaatttagcaaacagttcagttcggttcggttcagttttcatcccgaaccgaaccatgcacacccctaat 22786732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 34821680 - 34821605
Alignment:
Q  226 ttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 302  Q
    ||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| || || |||||||||||||||    
T  34821680 ttcagttattttaaatttagcaaacagttcagttcggtttggttcagttttcatctcg-accgaaccatgcccaccc 34821605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 5993619 - 5993536
Alignment:
Q  224 agttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaat 307  Q
    |||||| |||||||||||||||| |||| |||| |||||||||||||| |||||||| | ||| |||||||| |||||||||||    
T  5993619 agttcaattattttaaatttagcgaacaattcaatttagttcggttcaattttcatctcaaaccgaaccatgtccacccctaat 5993536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 199 - 281
Target Start/End: Complemental strand, 44011829 - 44011747
Alignment:
Q  199 gttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcc 281  Q
    ||||| || |||||||||| |||||||||||||||| ||||||||| ||||||||||||||  ||||| ||||||||| ||||    
T  44011829 gttcagttcgaaatgcaaacagttcagttcagttatattaaatttatcaaacagttcagttcggttcgattcagttttaatcc 44011747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 32567153 - 32567090
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatccc 282  Q
    ||||| |||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||||    
T  32567153 agttcggttcagttattttaaattcaataaacaattcagtttagttcggttcagttttcatccc 32567090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 85777 - 85712
Alignment:
Q  199 gttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagtt 264  Q
    ||||| || |||||||||||| |||| |||| ||||||||||||||||||||||||||||| ||||    
T  85777 gttcagttcgaaatgcaaatatttcaattcaattattttaaatttagcaaacagttcagttcagtt 85712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 8812463 - 8812386
Alignment:
Q  218 tagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatg 295  Q
    ||||||| |||||||||||||||||||  ||| |||||||||| ||| |||| ||||||||| |||| ||||||||||    
T  8812463 tagttcaattcagttattttaaatttaataaatagttcagttttgtttggtttagttttcattccgatctgaaccatg 8812386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 45376465 - 45376421
Alignment:
Q  261 agttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  45376465 agttcagttcagttttcatcccgaactgaaccatgcccaccccta 45376421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 42254346 - 42254266
Alignment:
Q  212 tgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 297  Q
    ||||||||||| |||||||||||||||||||||  |||||| ||     ||||||||| |||||||||| | ||||||||||||||    
T  42254346 tgcaaatagtttagttcagttattttaaatttaataaacagctc-----agttcggtttagttttcatcacaaactgaaccatgcc 42254266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 313
Target Start/End: Original strand, 52247466 - 52247548
Alignment:
Q  226 ttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaatcactac 313  Q
    |||| |||||||||||||| ||||||||||||||     ||||||| ||||||||  |||| ||||||||||||  ||||||||||||    
T  52247466 ttcaattattttaaatttaacaaacagttcagtt-----cggttcacttttcatcatgaaccgaaccatgcccattcctaatcactac 52247548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 47756453 - 47756527
Alignment:
Q  220 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccat 294  Q
    |||||||| |||| ||||| ||||| |||  ||||||||| ||||||||||| |||||||||| ||| |||||||    
T  47756453 gttcagtttagttgttttacatttaacaagtagttcagttcagttcggttcaattttcatcccaaaccgaaccat 47756527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 28283241 - 28283181
Alignment:
Q  225 gttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaa 285  Q
    ||||||||||||| ||||||| ||||| | |||||||  ||| ||||||||||||||||||    
T  28283241 gttcagttattttgaatttagtaaacaatccagtttaactcgattcagttttcatcccgaa 28283181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 47930942 - 47930895
Alignment:
Q  116 ttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 163  Q
    |||||||||||  |||||||||| ||||||||||||||||||| ||||    
T  47930942 ttcggaacagtccagttcagttcggtaactaaaattcaatttcgtttg 47930895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 8812562 - 8812528
Alignment:
Q  129 agttcagttctgtaactaaaattcaatttcatttg 163  Q
    |||||||||| ||||||||||||||||||||||||    
T  8812562 agttcagttcggtaactaaaattcaatttcatttg 8812528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 15661640 - 15661573
Alignment:
Q  229 agttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacc 301  Q
    |||||||||||||||||||||      ||||||||||||||||| |||||| | |||| ||||||| ||||||    
T  15661640 agttattttaaatttagcaaa-----tagtttagttcggttcagatttcattctgaaccgaaccatacccacc 15661573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 39549711 - 39549648
Alignment:
Q  241 tttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||||||||| |||||||| ||| ||||||||| |||| |||||  |||||||| |||||||||    
T  39549711 tttagcaaacaattcagtttggtttggttcagttatcat-ccgaatcgaaccatgtccaccccta 39549648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 198 - 302
Target Start/End: Original strand, 5131302 - 5131406
Alignment:
Q  198 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 297  Q
    |||||| || |||||| ||| ||||||||||  ||||||||||||||||||| |||| |||| |||||||||||||||||||||| ||||||||||| ||    
T  5131302 agttcagttcgaaatgtaaacagttcagttctattattttaaatttagcaaatagtttagttcagttcggttcagttttcatcccaaactgaaccatacc 5131401  T
Q  298 caccc 302  Q
    |||||    
T  5131402 caccc 5131406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 215 - 305
Target Start/End: Complemental strand, 19914431 - 19914351
Alignment:
Q  215 aaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  19914431 aaatagttcagttcagttattttaaatttagcaaacagttca----------gttcagttttcatcccgaactgaaccatgcccaccccta 19914351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 22920923 - 22920845
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 302  Q
    ||||||||||||||||||||||||||||||| ||||||||||     ||||||||||||||||||||||||| |||||||||||    
T  22920923 agttcagttcagttattttaaatttagcaaatagttcagttt-----ggttcagttttcatcccgaactgaatcatgcccaccc 22920845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 219 - 305
Target Start/End: Original strand, 43259887 - 43259968
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    |||||||||||||||||||||||||| ||||||||||||||     || |||||||||||||| ||||||||||||| |||||||||    
T  43259887 agttcagttcagttattttaaatttaacaaacagttcagtt-----cgattcagttttcatcctgaactgaaccatgtccaccccta 43259968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 10476566 - 10476625
Alignment:
Q  223 cagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatccc 282  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||    
T  10476566 cagttcagttattttaaatttaacaaacagttcagttttgttcggttcaattttcatccc 10476625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 27946945 - 27946869
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatg 295  Q
    ||||||||| |||||||||||||||| |||||| ||||||||  |||||| || |||||||||| ||||||||||||    
T  27946945 agttcagtttagttattttaaatttaacaaacaattcagtttgattcggtacatttttcatcccaaactgaaccatg 27946869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 34071392 - 34071472
Alignment:
Q  226 ttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaa 306  Q
    ||||||||||||||||||| |||||| ||||||||  || |||| |||||||| ||||||| |||||||| ||||||||||    
T  34071392 ttcagttattttaaatttatcaaacaattcagtttgatttggtttagttttcaacccgaaccgaaccatgtccacccctaa 34071472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 29452330 - 29452407
Alignment:
Q  223 cagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccac 300  Q
    |||||||||||||||||||||| |||||| |||| ||||||| | || | |||||||||| |||| ||||||||||||    
T  29452330 cagttcagttattttaaatttaacaaacatttcaatttagtttgatttaattttcatcccaaactaaaccatgcccac 29452407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 5791862 - 5791776
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    |||||| || |||||||||||||||| ||||||||||||||||| | ||||  ||||||||||  || ||||||||  |||||||||    
T  5791862 agttcacttaagttattttaaatttaacaaacagttcagtttagattggtttggttttcatcctaaagtgaaccatatccaccccta 5791776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 19914543 - 19914485
Alignment:
Q  105 aaacagttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 163  Q
    ||||||||||||||| || |||| |||| ||||| ||||||||||||||||||||||||    
T  19914543 aaacagttcagttcgaaagagttcagtttagttcggtaactaaaattcaatttcatttg 19914485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 3883808 - 3883734
Alignment:
Q  231 ttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||||| ||||||||||||| ||||||||||   |||||| |||||||| |||||  |||||| ||||||||||    
T  3883808 ttattttgaatttagcaaacaattcagtttagacaggttcaattttcatctcgaaccaaaccatacccaccccta 3883734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 43399436 - 43399355
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||| |||||||||||||||||||||||||     || ||| ||||||| ||||||||||| | |||||||||||| ||| |||||    
T  43399436 agttcggttcagttattttaaatttagcaaa-----caatttggttcggtccagttttcatctcaaactgaaccatgtccatcccta 43399355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 6644865 - 6644949
Alignment:
Q  220 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||| |||||||||||||||||||||||||| || ||||| | || |||| |||||||| |||||  ||| ||||| ||||||||    
T  6644865 gttcaattcagttattttaaatttagcaaacaatttagttt-ggtcagttctgttttcattccgaatcgaatcatgcacaccccta 6644949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 16489194 - 16489133
Alignment:
Q  221 ttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatccc 282  Q
    ||||||||| ||||||||||||||  ||| | |||||||  |||||||||||||||||||||    
T  16489194 ttcagttcaattattttaaatttaataaataattcagttcggttcggttcagttttcatccc 16489133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 27514527 - 27514580
Alignment:
Q  218 tagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttca 271  Q
    |||||||||||| |||||| ||||||| |||||||||||||| | |||||||||    
T  27514527 tagttcagttcaattatttaaaatttaacaaacagttcagttcaattcggttca 27514580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 27514402 - 27514436
Alignment:
Q  129 agttcagttctgtaactaaaattcaatttcatttg 163  Q
    |||||||||| ||||||||||||||||||||||||    
T  27514402 agttcagttcggtaactaaaattcaatttcatttg 27514436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 29445299 - 29445253
Alignment:
Q  111 ttcagttcggaacagtttagttcagttctgtaactaaaattcaattt 157  Q
    |||||||||||||||||  | ||||||| ||||||||||||||||||    
T  29445299 ttcagttcggaacagttcggctcagttcagtaactaaaattcaattt 29445253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 11672315 - 11672356
Alignment:
Q  261 agttcggttcagttttcatcccgaactgaaccatgcccaccc 302  Q
    |||||| ||||||||||||||||||| |||||||||| ||||    
T  11672315 agttcgattcagttttcatcccgaaccgaaccatgccaaccc 11672356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 30595523 - 30595426
Alignment:
Q  198 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 297  Q
    ||||||||| |||||||||| | |||||||| |||||||||||||||||||||| ||||          ||||| |||||||||||||||||||||||||    
T  30595523 agttcaattcgaaatgcaaacaattcagttcggttattttaaatttagcaaacaattca----------gttcaattttcatcccgaactgaaccatgcc 30595434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 42651389 - 42651493
Alignment:
Q  208 gaaatgcaaatagttcagttc-----agttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 302  Q
    |||||||||||||||||||||     |||||||||||| ||||||||||| | | ||| |||||||||| |||| ||||| ||| |||||||||||||||    
T  42651389 gaaatgcaaatagttcagttcggtttagttattttaaaattagcaaacagattaatttggttcggttcaattttgatcccaaaccgaaccatgcccaccc 42651488  T
Q  303 ctaat 307  Q
    |||||    
T  42651489 ctaat 42651493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 305
Target Start/End: Original strand, 35699690 - 35699767
Alignment:
Q  223 cagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||||| |||||||||||||| |||||| |||||||     |||||||||||||||||||||| ||||||||||||||||||    
T  35699690 cagttcaattattttaaatttatcaaacaattcagtt-----cggttcagttttcatcccgaaccgaaccatgcccaccccta 35699767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 3639863 - 3639943
Alignment:
Q  220 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    |||| |||||||||||||||||||| |||||| |||||||     ||||||||||||||||| ||| ||||||||||||| |||||    
T  3639863 gttcggttcagttattttaaatttaacaaacatttcagtt-----cggttcagttttcatcctgaaatgaaccatgcccatcccta 3639943  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 18605256 - 18605171
Alignment:
Q  220 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    |||||||| | ||||||||||||||||||| |||| |||||||||||||  | |||| ||||||||  |||||| |||||||||||    
T  18605256 gttcagtttaattattttaaatttagcaaagagtttagtttagttcggtctaatttttatcccgaatcgaaccaagcccaccccta 18605171  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 3867680 - 3867724
Alignment:
Q  262 gttcggttcagttttcatcccgaactgaaccatgcccacccctaa 306  Q
    |||| |||||||||||||||||||| |||||||||||||||||||    
T  3867680 gttcagttcagttttcatcccgaaccgaaccatgcccacccctaa 3867724  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 11781658 - 11781582
Alignment:
Q  229 agttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 305  Q
    ||||||||| |||||| ||||| |||| |||  |||| |||||||||||||||| |||  ||| |||||||||||||    
T  11781658 agttattttgaatttaacaaacggttcggttcggttcagttcagttttcatcccaaaccaaactatgcccaccccta 11781582  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 387757 - 387723
Alignment:
Q  129 agttcagttctgtaactaaaattcaatttcatttg 163  Q
    ||||||||| |||||||||||||||||||||||||    
T  387757 agttcagttttgtaactaaaattcaatttcatttg 387723  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 30595617 - 30595575
Alignment:
Q  121 aacagtttagttcagttctgtaactaaaattcaatttcatttg 163  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||    
T  30595617 aacagttcagttcaattcggtaactaaaattcaatttcatttg 30595575  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 306
Target Start/End: Complemental strand, 42326788 - 42326690
Alignment:
Q  205 tttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccct 304  Q
    |||||||||||||||||||| ||   ||| ||||||||||||||||| ||  ||| |||||  ||| |||||||||| || | ||||||| |||||||||    
T  42326788 tttgaaatgcaaatagttcattt--atta-tttaaatttagcaaacaattatgttaagttcaattctgttttcatccggagccgaaccatacccacccct 42326692  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 2259830 - 2259758
Alignment:
Q  225 gttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 302  Q
    ||||| |||||||||||||| |||||| |||||||     ||||||||||||||||  |||| ||||||| |||||||    
T  2259830 gttcaattattttaaatttaacaaacaattcagtt-----cggttcagttttcatcttgaaccgaaccatacccaccc 2259758  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 18605401 - 18605352
Alignment:
Q  114 agttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 163  Q
    |||||||||||||| |||||||||  ||||||||||||| ||||| ||||    
T  18605401 agttcggaacagttcagttcagtttggtaactaaaattctatttcgtttg 18605352  T

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Target: scaffold0024 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 60104 - 60031
Alignment:
Q  229 agttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaat 307  Q
    |||||||||||||||| ||||||||||||||     || |||||||||||||||||||||||||||| |||||||||||    
T  60104 agttattttaaatttaacaaacagttcagtt-----cgattcagttttcatcccgaactgaaccatgtccacccctaat 60031  T

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Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 60232 - 60182
Alignment:
Q  108 cagttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 163  Q
    ||||||||||||||||||||     ||||||||||||||||||||||||| |||||    
T  60232 cagttcagttcggaacagtt-----cagttctgtaactaaaattcaatttaatttg 60182  T

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Target: scaffold0198 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 10229 - 10284
Alignment:
Q  251 agttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaa 306  Q
    |||||||||| ||| |||||||||||||||  |||| |||||||||||||||||||    
T  10229 agttcagtttggtttggttcagttttcatctggaacggaaccatgcccacccctaa 10284  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 20692 - 20733
Alignment:
Q  219 agttcagttcagttattttaaatttagcaaacagttcagttt 260  Q
    ||||||||| | ||||||||||||||||||||| ||||||||    
T  20692 agttcagttaatttattttaaatttagcaaacatttcagttt 20733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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