View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_high_34 (Length: 362)
Name: NF15978_high_34
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 2 - 346
Target Start/End: Original strand, 40198224 - 40198568
Alignment:
| Q |
2 |
gcatagggaggtaagccatataatccgtttaattaaacattatcttttctcttcattttaatatattttgttttcactactcccaggacctgtaatgaac |
101 |
Q |
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| T |
40198224 |
gcattgggaggtaagccatataatccgtttaattaaacattatcctttctcttcattttaatatattttgttttcactactcccaggacctgtaatgaac |
40198323 |
T |
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| Q |
102 |
aaatttaccattgctttgagagaaatcactacatacaaggaacttcttcgctcacaggtaatcattatctattcaagttttatttctcaattgatattgc |
201 |
Q |
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| T |
40198324 |
aaatttaccattgctttgagagaaatcactacatacaaggaacttcttcgctcacaggtaatcattatctattgaacttttatttctcaattgatattgc |
40198423 |
T |
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| Q |
202 |
tatgctgactgtacttaatatggcttcttaggtagaccacatgattgatgaccgcctattacaaattgtcaatgttgacatcaatgaagtcaaggtatgc |
301 |
Q |
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| T |
40198424 |
tatgctgactgtacttaatatggcttcttaggtagaccacatgattgatgaccgcctattacaaattgtcaatgttgacatcaatgaagtcaaggtatgc |
40198523 |
T |
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| Q |
302 |
ttttatatggtttatactttgcggtgtttgttcttatacattaag |
346 |
Q |
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| T |
40198524 |
ttttagatggtttatactttgctgtgtttgttcgtatacattaag |
40198568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 45083905 - 45083984
Alignment:
| Q |
84 |
ccaggacctgtaatgaacaaatttaccattgctttgagagaaatcactacatacaaggaacttcttcgctcacaggtaat |
163 |
Q |
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| T |
45083905 |
ccaggacctgtaatggccaaattctctattgctttgagagaaatcagtacacacaaggaacttcttcgttcacaggtaat |
45083984 |
T |
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