View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15978_high_35 (Length: 351)
Name: NF15978_high_35
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_high_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 161 - 316
Target Start/End: Original strand, 10581941 - 10582095
Alignment:
| Q |
161 |
ttatactaactcaaaacaacttgttgctacatctagacctctccttgcagagagattttgtattcttcaatcgaaggacttgatctactaaaatatgcat |
260 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||| || |
|
|
| T |
10581941 |
ttatactaactcaaaacaaatttttgctacatctagacctctccttgcagagagattttgcattcttcactcaaaggacttgatctactaaaatatgtat |
10582040 |
T |
|
| Q |
261 |
tcttca-tctagtcttcttaataaattctgaatattcatcaatatttatcttagaac |
316 |
Q |
| |
|
||||| ||| |||| ||| | | | ||||||||||||||||||||||||||||| |
|
|
| T |
10582041 |
tcttcgctct-gtct-cttcaagcactgtgaatattcatcaatatttatcttagaac |
10582095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10581782 - 10581869
Alignment:
| Q |
1 |
tttctatacaactttctgaaggtattggcaacacaagaaaatgagctttatcaaagatttctcattccctaaaaatgtttgattaaag |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
10581782 |
tttctatacaactttctgaaggtattggcaacacaagaaaatgagctttatcaaagatttctcattccctaaaaatgtctgtttaaag |
10581869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University