View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15978_high_40 (Length: 335)

Name: NF15978_high_40
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15978_high_40
NF15978_high_40
[»] chr7 (2 HSPs)
chr7 (14-313)||(34889714-34890016)
chr7 (16-102)||(12163684-12163771)
[»] chr3 (3 HSPs)
chr3 (16-95)||(27158286-27158366)
chr3 (16-107)||(5528373-5528465)
chr3 (16-102)||(35314121-35314206)
[»] chr1 (3 HSPs)
chr1 (14-102)||(39003161-39003250)
chr1 (24-95)||(676096-676168)
chr1 (16-80)||(1485407-1485471)
[»] chr2 (7 HSPs)
chr2 (16-83)||(41501070-41501137)
chr2 (25-102)||(141022-141100)
chr2 (32-83)||(13779112-13779163)
chr2 (16-83)||(17560790-17560858)
chr2 (16-83)||(41969382-41969449)
chr2 (31-83)||(16907919-16907971)
chr2 (16-72)||(40800161-40800217)
[»] chr6 (1 HSPs)
chr6 (16-95)||(11714186-11714266)
[»] chr4 (4 HSPs)
chr4 (16-71)||(53402529-53402584)
chr4 (20-82)||(4826199-4826261)
chr4 (49-84)||(53618814-53618849)
chr4 (51-83)||(5321984-5322016)
[»] chr5 (2 HSPs)
chr5 (36-83)||(34443312-34443359)
chr5 (51-83)||(20429103-20429135)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 34890016 - 34889714
Alignment:
Q  14 catcaccctcaaggtatgattcttttcccacacgcttttacacattcaacctcatttcttacactgacttagtgttggagtggtaacgttcctg---gca 110  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||   |||    
T  34890016 catcaccctcaaggtatgattcttttcccacacgcttgtacacattcaacctcatttcctacactgacttagtgttggagtggtaacgttcctgcaggca 34889917  T
Q  111 cccttctttccatcgtagaaatcgcaccatcgccgtgtcggagcaccgcactgccaccgttgccatcatccgtcgttgtccgatatatcattttttacct 210  Q
    |||||| ||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||  |||| |||||| |||||||||    
T  34889916 cccttcgttccatcgtggagatcgcaccatcgccgtgtcggagcaccgcactaccaccgttgccatcatccgtctttacccgacatatcagtttttacct 34889817  T
Q  211 cacatgcaaattctttcttacaaatgtttttaattgtaattgtaataataataatagcaacaatttattttggccaagtaaattcagaagacccccaaca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34889816 cacatgcaaattctttcttacaaatgtttttaattgtaattgtaatagtaataatagcaacaatttattttggccaagtaaattcagaagacccccaaca 34889717  T
Q  311 gat 313  Q
    |||    
T  34889716 gat 34889714  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 12163684 - 12163771
Alignment:
Q  16 tcaccctcaaggtatgattcttttcccacacgcttttacacattcaacctcatttcttacactgac-ttagtgttggagtggtaacgt 102  Q
    ||||||||||| || ||||| |||||||||   |||||||||||||||| |||||| |||||| || | || ||||||||| ||||||    
T  12163684 tcaccctcaagttacgattcatttcccacataattttacacattcaaccccatttcctacactaacatgagcgttggagtgctaacgt 12163771  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 27158366 - 27158286
Alignment:
Q  16 tcaccctcaaggtatgattcttttcccacacgcttttacacattcaacctcatttcttacactgactt-agtgttggagtg 95  Q
    ||||||||||||||  |||| |||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  27158366 tcaccctcaaggtacaattcatttcccacacacttttacacattcaaccttatttcgtacactgacttaagtgttggagtg 27158286  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 5528373 - 5528465
Alignment:
Q  16 tcaccctcaaggtatgattcttttcccacacgcttttacacattcaacctcatttcttacactgactt-agtgttggagtggtaacgttcctg 107  Q
    |||||||||||||| ||||  |||| ||||| |||||||||||||||||||||||| ||| |||||||  |||||||| || |||||| ||||    
T  5528373 tcaccctcaaggtacgatttatttctcacacacttttacacattcaacctcatttcctactctgacttgggtgttggaatgctaacgtgcctg 5528465  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 35314121 - 35314206
Alignment:
Q  16 tcaccctcaaggtatgattcttttcccacacgcttttacacattcaacctcatttcttacactgactt-agtgttggagtggtaacgt 102  Q
    |||||||||||||| ||||| ||||||||||  ||||  |||||||| |||||||| |  |||||||| || ||||||||| ||||||    
T  35314121 tcaccctcaaggtacgattcatttcccacacatttttgtacattcaatctcatttcct--actgacttgagcgttggagtgctaacgt 35314206  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 39003250 - 39003161
Alignment:
Q  14 catcaccctcaaggtatgattcttttcccacacgcttttacacattcaacctcatttcttacactgactt-agtgttggagtggtaacgt 102  Q
    |||||||||||||||| ||||  |||||||||| |||||||||||||||| ||||||| |||||||| || ||||||||| || ||||||    
T  39003250 catcaccctcaaggtacgattaatttcccacacacttttacacattcaacttcatttcctacactgatttgagtgttggactgctaacgt 39003161  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 676096 - 676168
Alignment:
Q  24 aaggtatgattcttttcccacacgcttttacacattcaacctcatttcttacactgactt-agtgttggagtg 95  Q
    |||||| ||||| |||| |||||| |||||||||||| |||| ||||| ||||||||||| | ||||||||||    
T  676096 aaggtaagattcatttctcacacggttttacacattcgaccttatttcctacactgacttgaatgttggagtg 676168  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 1485471 - 1485407
Alignment:
Q  16 tcaccctcaaggtatgattcttttcccacacgcttttacacattcaacctcatttcttacactga 80  Q
    |||||||||||||||||||| |||||| |||  |||||||||||| | |||| ||| ||||||||    
T  1485471 tcaccctcaaggtatgattcatttccctcacatttttacacattccatctcaattcctacactga 1485407  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 41501070 - 41501137
Alignment:
Q  16 tcaccctcaaggtatgattcttttcccacacgcttttacacattcaacctcatttcttacactgactt 83  Q
    |||||||||||||| ||||| ||||||||||  ||||||||||| ||||||||||| |||||||||||    
T  41501070 tcaccctcaaggtacgattcatttcccacacttttttacacattaaacctcatttcctacactgactt 41501137  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 141022 - 141100
Alignment:
Q  25 aggtatgattcttt-tcccacacgcttttacacattcaacctcatttcttacactgactt-agtgttggagtggtaacgt 102  Q
    ||||||||||| || ||||||||  |||||||||||||||||| ||||||| |||||||| |||||||||||| ||||||    
T  141022 aggtatgattcattatcccacact-ttttacacattcaacctcgtttcttatactgacttgagtgttggagtgttaacgt 141100  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 13779112 - 13779163
Alignment:
Q  32 attcttttcccacacgcttttacacattcaacctcatttcttacactgactt 83  Q
    |||| |||||||||  ||||||||||||||||||||||||||||||| ||||    
T  13779112 attcatttcccacaaacttttacacattcaacctcatttcttacactaactt 13779163  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 17560858 - 17560790
Alignment:
Q  16 tcaccctcaaggtatgattc-ttttcccacacgcttttacacattcaacctcatttcttacactgactt 83  Q
    ||||||||||||||  |||| |||| ||||||  | ||||||||||||||||||||| |||||||||||    
T  17560858 tcaccctcaaggtacaattcatttttccacacattcttacacattcaacctcatttcctacactgactt 17560790  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 41969449 - 41969382
Alignment:
Q  16 tcaccctcaaggtatgat-tcttttcccacacgcttttacacattcaacctcatttcttacactgactt 83  Q
    |||||||||||||| ||| | |||| ||||||  |||||| ||||||||||||||||||||||||||||    
T  41969449 tcaccctcaaggtacgatatatttttccacact-ttttacccattcaacctcatttcttacactgactt 41969382  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 16907971 - 16907919
Alignment:
Q  31 gattcttttcccacacgcttttacacattcaacctcatttcttacactgactt 83  Q
    ||||| |||||| ||| |||||||||||||||||||||||  |||| ||||||    
T  16907971 gattcatttcccgcacacttttacacattcaacctcattttctacaatgactt 16907919  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 40800217 - 40800161
Alignment:
Q  16 tcaccctcaaggtatgattcttttcccacacgcttttacacattcaacctcatttct 72  Q
    |||||||||||||| ||||| |||||  ||| |||||||||| ||||| ||||||||    
T  40800217 tcaccctcaaggtacgattcatttcctccacacttttacacaatcaacatcatttct 40800161  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 11714266 - 11714186
Alignment:
Q  16 tcaccctcaaggtatgattcttttcccacacgcttttacacattcaacctcatttcttacactgactt-agtgttggagtg 95  Q
    ||||||||||||||  |||| ||||||| ||  ||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  11714266 tcaccctcaaggtacaattcatttcccatacatttttacacattcaacctcatttcctacacagacttgagtgttggagtg 11714186  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 53402584 - 53402529
Alignment:
Q  16 tcaccctcaaggtatgattcttttcccacacgcttttacacattcaacctcatttc 71  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||| |||||||||    
T  53402584 tcaccctcaaggtacgattcatttcccacacacttttacacattcatcctcatttc 53402529  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 4826261 - 4826199
Alignment:
Q  20 cctcaaggtatgattcttttcccacacgcttttacacattcaacctcatttcttacactgact 82  Q
    |||||| ||| ||||| |||||||||| ||||||| || |||| |||||||||||||||||||    
T  4826261 cctcaaagtacgattcatttcccacacacttttacccactcaatctcatttcttacactgact 4826199  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 53618849 - 53618814
Alignment:
Q  49 ttttacacattcaacctcatttcttacactgactta 84  Q
    |||| |||||||||||||||||||||||||||||||    
T  53618849 tttttcacattcaacctcatttcttacactgactta 53618814  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 5321984 - 5322016
Alignment:
Q  51 ttacacattcaacctcatttcttacactgactt 83  Q
    ||||||||||||||||||||| |||||||||||    
T  5321984 ttacacattcaacctcatttcctacactgactt 5322016  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 34443359 - 34443312
Alignment:
Q  36 ttttcccacacgcttttacacattcaacctcatttcttacactgactt 83  Q
    ||||||||||| |||||||||||||||| ||||||| |||||||||||    
T  34443359 ttttcccacacacttttacacattcaacttcatttcctacactgactt 34443312  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 20429103 - 20429135
Alignment:
Q  51 ttacacattcaacctcatttcttacactgactt 83  Q
    ||||||||||||||||||||| |||||||||||    
T  20429103 ttacacattcaacctcatttcctacactgactt 20429135  T

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