View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_high_42 (Length: 328)
Name: NF15978_high_42
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_high_42 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0272 (3 HSPs) |
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| [»] scaffold0719 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 21256916 - 21256632
Alignment:
| Q |
16 |
ggagtatattgcaaaacactgctagtgtaaattaaagattagagcagatgaactggaaagtcactgtttaatatatgctaagcaaagaagccaacactct |
115 |
Q |
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| T |
21256916 |
ggagtatattgcaaaacactgctagtgtaaattaaagattagagcagatgaactggaaagtcactgtttaatatatgctaagcaaagcagccaacacttt |
21256817 |
T |
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| Q |
116 |
ggaattgatgttataatgagaacatgtcactgtaatgtgctaaaaataactacatacatgtaaccacatatttcatctcactaataannnnnnnataacc |
215 |
Q |
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| T |
21256816 |
ggaattgatgttataatgagaacatgtcactctaatgtgctgaaaataactacatacatgtaaccacatatttcatctcgctaat-gtttttttataacc |
21256718 |
T |
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| Q |
216 |
attttaacaaaatcatgatttattaagatgtagtaatgatatctagatttgatttgctaattaatggttgatattacttactttat |
301 |
Q |
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| T |
21256717 |
attttaacaaattcatgatttgttaagatgtacttatgatatctagatttgatttgctaattaatggttgatattacttactttat |
21256632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 306
Target Start/End: Complemental strand, 21166972 - 21166786
Alignment:
| Q |
124 |
tgttataatgagaacatgtcactgtaatgtgctaaaaataactacatacatgtaaccacatatttcatctcactaataannnnnnnataaccattttaac |
223 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||| | |||||| ||| ||||||||||||||| ||||| | |||| |||||||| |
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| T |
21166972 |
tgttataatgagaatatgtcactgtaatgtgcttaaaataatcaaatacatataatcacatatttcatctcgctaatga-ttttttataagtattttaac |
21166874 |
T |
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| Q |
224 |
-----aaaatcatgatttattaagatgtagtaatgatatctagatttgatttgctaattaatggttgatattacttactttataatgt |
306 |
Q |
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| T |
21166873 |
aaattaaactcgtgatttgttaagatatattaatgatatctatatttgatttgttaattaatggttaatattacttattttgtaatgt |
21166786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 21201480 - 21201410
Alignment:
| Q |
125 |
gttataatgagaacatgtcactgtaatgtgctaaaaataactacatacatgtaaccacatatttcatctca |
195 |
Q |
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| T |
21201480 |
gttatgatgagaacatgacattgtaatgagctgaaaataactacatacatgtaaccacatacatcatctca |
21201410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 21354090 - 21354037
Alignment:
| Q |
253 |
gatatctagatttgatttgctaattaatggttgatattacttactttataatgt |
306 |
Q |
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| T |
21354090 |
gatatctatatatgatttgttaattaatggttgatattacttactttataatgt |
21354037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 21314848 - 21314803
Alignment:
| Q |
125 |
gttataatgagaacatgtcactgtaatgtgctaaaaataactacat |
170 |
Q |
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| T |
21314848 |
gttataatgagaatatgtcactgtaatgtgctgaaaataactacat |
21314803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 312
Target Start/End: Original strand, 70556 - 70739
Alignment:
| Q |
127 |
tataatgagaacatgtcactgtaatgtgctaaaaataactacatacatgtaaccacatatttcatctcactaataannnnnnnataaccattttaacaaa |
226 |
Q |
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|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| || ||||| | |||| |||||||||||| |
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| T |
70556 |
tataatgataacatgtcactataatgtgccgaaaataactacatacatgtaaccacatatatcatttcgctaatga--tttttataagcattttaacaaa |
70653 |
T |
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| Q |
227 |
atcatgatttattaagatgtagtaatgatatctagatttgatttgctaattaatggttgatattacttactttataatgttaagtg |
312 |
Q |
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||||||||| ||| |||||| | | |||||||| || ||||| | ||| ||||| || ||||||||||||||||||| ||||| |
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| T |
70654 |
ctcatgatttgttatgatgtacttacgatatctatatatgattcgttaaataatgacggagattacttactttataatgtaaagtg |
70739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 8540 - 8638
Alignment:
| Q |
210 |
ataaccattttaacaaaatcatgatttattaagatgtagtaatgatatctagatttgatt--tgctaattaatggttgatattacttactttataatgt |
306 |
Q |
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|||| |||||||| ||| |||||||| |||||||||| |||||||||||| |||||||| | |||||||| || ||||||||||||||| ||||| |
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| T |
8540 |
ataaacattttaataaacacatgatttgttaagatgtactaatgatatctatatttgattcgtataaattaatgtttaatattacttactttacaatgt |
8638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 20858 - 20785
Alignment:
| Q |
127 |
tataatgagaacatgtcactgtaatgtgctaaaaataactacatacatgtaaccacatatttcatctcactaat |
200 |
Q |
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|||||||| ||||||||||| |||| | |||| ||||||||| ||||||||||||||| ||||||| ||||| |
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| T |
20858 |
tataatgataacatgtcactaatatgttccaaaactaactacatgcatgtaaccacatatatcatctcgctaat |
20785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 8402 - 8462
Alignment:
| Q |
58 |
agcagatgaactggaaagtcactgtttaatatatgctaagcaaagaagccaacactctgga |
118 |
Q |
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||||| ||||||| |||||||||||| |||||| |||||||||| || |||||||||||| |
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| T |
8402 |
agcagttgaactgaaaagtcactgttcaatataatctaagcaaagcaggcaacactctgga |
8462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 302
Target Start/End: Original strand, 39421554 - 39421640
Alignment:
| Q |
216 |
attttaacaaaatcatgatttattaagatgtagtaatgatatctagatttgatttgctaattaatggttgatattacttactttata |
302 |
Q |
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||||||||||| ||||||||| ||| | |||| | | ||||||| ||||||||| |||| |||||||||||||||| |||||||| |
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| T |
39421554 |
attttaacaaactcatgatttgttatggtgtacttctaatatctacctttgatttgttaatcaatggttgatattactcactttata |
39421640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0719
Description:
Target: scaffold0719; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 6798 - 6726
Alignment:
| Q |
128 |
ataatgagaacatgtcactgtaatgtgctaaaaataactacatacatgtaaccacatatttcatctcactaat |
200 |
Q |
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||||||| ||||||||||| |||| | ||||||||||||||||||||||||||||| || |||| ||||| |
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| T |
6798 |
ataatgataacatgtcactaatatgttccgaaaataactacatacatgtaaccacatatatcgtctcgctaat |
6726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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