View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15978_high_49 (Length: 304)

Name: NF15978_high_49
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15978_high_49
NF15978_high_49
[»] chr7 (4 HSPs)
chr7 (16-163)||(6209859-6210006)
chr7 (16-161)||(6111286-6111425)
chr7 (53-161)||(6250937-6251045)
chr7 (52-161)||(6183391-6183497)
[»] chr4 (4 HSPs)
chr4 (235-295)||(4324033-4324093)
chr4 (224-296)||(4332480-4332552)
chr4 (235-269)||(6592337-6592371)
chr4 (229-294)||(4356588-4356653)
[»] chr6 (5 HSPs)
chr6 (237-301)||(5070610-5070674)
chr6 (237-301)||(5358327-5358391)
chr6 (229-294)||(5077283-5077348)
chr6 (237-294)||(5137800-5137857)
chr6 (237-301)||(5422050-5422114)
[»] chr8 (2 HSPs)
chr8 (239-275)||(25951828-25951864)
chr8 (239-275)||(25961079-25961115)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 6210006 - 6209859
Alignment:
Q  16 ctgggaacacgttacaagagtagaaaatggtcctcaatggatatgcaattattgtaaagataagtttagtggaggagcttcaagaattcaagcacacctg 115  Q
    |||| |||||||||||  |||||||||||||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||    
T  6210006 ctggaaacacgttacagaagtagaaaatggtcgtaaatggatatgcaaatattgtaatgataagtttagtggaggagcttcaagaattgaagcacatctg 6209907  T
Q  116 aggttggatggcaaaagcggaggcattaagcgatgctccaattatcct 163  Q
     ||||| |||||||| | |||||||||| |||||||||||||||||||    
T  6209906 gggttgaatggcaaaggtggaggcattaggcgatgctccaattatcct 6209859  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 6111425 - 6111286
Alignment:
Q  16 ctgggaacacgttacaagagtagaaaatggtcctcaatggatatgcaattattgtaaagataagtttagtggaggagcttcaagaattcaagcacacctg 115  Q
    |||| |||| |||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||      
T  6111425 ctggaaacatgttacaagagtagaaaatggtcttaaatggatatgcaattattgtaatgataagtttagtggaggagcttctagaattcaaacacacc-- 6111328  T
Q  116 aggttggatggcaaaagcggaggcattaagcgatgctccaattatc 161  Q
       |||| ||||||| | |||||||||| |||||||||||||||||    
T  6111327 ---ttgg-tggcaaaggaggaggcattaggcgatgctccaattatc 6111286  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 6251045 - 6250937
Alignment:
Q  53 tggatatgcaattattgtaaagataagtttagtggaggagcttcaagaattcaagcacacctgaggttggatggcaaaagcggaggcattaagcgatgct 152  Q
    |||||||||||||||||||| || |||| ||||||||||||||| |||||| ||||||| ||| | ||| |||||||| | ||||||||||||| |||||    
T  6251045 tggatatgcaattattgtaatgagaagtatagtggaggagcttctagaattgaagcacaactgggtttgaatggcaaaggaggaggcattaagccatgct 6250946  T
Q  153 ccaattatc 161  Q
    |||| ||||    
T  6250945 ccaaatatc 6250937  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 6183497 - 6183391
Alignment:
Q  52 atggatatgcaattattgtaaagataagtttagtggaggagcttcaagaattcaagcacacctgaggttggatggcaaaagcggaggcattaagcgatgc 151  Q
    ||||||||||||||||||||    | ||| ||||||||||||||| |||||| ||||||| ||| | ||| ||||||||   |||||||||| |||||||    
T  6183497 atggatatgcaattattgtagtattgagtatagtggaggagcttctagaattgaagcacatctgggtttgaatggcaaa---ggaggcattaggcgatgc 6183401  T
Q  152 tccaattatc 161  Q
    ||||| ||||    
T  6183400 tccaaatatc 6183391  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 4324093 - 4324033
Alignment:
Q  235 gtatgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctc 295  Q
    |||||| ||||| |||||||||||||||||||||||||||||||| |||| ||| ||||||    
T  4324093 gtatgacgtgtttttgagtttccgaggagaagacactcgcgcatcattcatttcacatctc 4324033  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 296
Target Start/End: Original strand, 4332480 - 4332552
Alignment:
Q  224 agtagaagaaggtatgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctct 296  Q
    |||| ||||| ||| |||||||||||||||||  |||| ||||||||||||||||| |||||||| |||||||    
T  4332480 agtataagaaagtacgatgtgttcttgagttttagaggcgaagacactcgcgcatcattcacttcacatctct 4332552  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 6592371 - 6592337
Alignment:
Q  235 gtatgatgtgttcttgagtttccgaggagaagaca 269  Q
    |||||||||||||||||||||| ||||||||||||    
T  6592371 gtatgatgtgttcttgagtttcagaggagaagaca 6592337  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 4356588 - 4356653
Alignment:
Q  229 aagaaggtatgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatct 294  Q
    ||||| ||| |||||||| ||||||||  |||||||||||||| | ||||| |||||||| |||||    
T  4356588 aagaaagtacgatgtgtttttgagttttagaggagaagacactagagcatcattcacttcacatct 4356653  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 5070674 - 5070610
Alignment:
Q  237 atgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctgtgct 301  Q
    ||||||||||||| |||||| ||||||| ||||||||| | || |||||||| ||||||| ||||    
T  5070674 atgatgtgttcttaagtttcagaggagaggacactcgctcttcattcacttcacatctctatgct 5070610  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 5358391 - 5358327
Alignment:
Q  237 atgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctgtgct 301  Q
    |||||||||||||||||||| ||||||| |||||||  || | ||||||||| ||||||| ||||    
T  5358391 atgatgtgttcttgagtttcagaggagaggacactcatgcttgcttcacttcacatctctatgct 5358327  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 5077348 - 5077283
Alignment:
Q  229 aagaaggtatgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatct 294  Q
    |||||| |||||||||||||| |||||| ||||||  |||||||| | ||| |||||||| |||||    
T  5077348 aagaagttatgatgtgttcttaagtttcagaggagtggacactcgtgaatctttcacttcacatct 5077283  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 5137857 - 5137800
Alignment:
Q  237 atgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatct 294  Q
    |||| |||||| ||||||| ||||| |||||||||||  ||||||||||||| |||||    
T  5137857 atgaagtgttcctgagttttcgaggggaagacactcgttcatccttcacttcacatct 5137800  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 5422050 - 5422114
Alignment:
Q  237 atgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctgtgct 301  Q
    ||||||||||||| |||||  ||||||| || ||||| ||||| |||||||| ||||||| ||||    
T  5422050 atgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatctctatgct 5422114  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 25951864 - 25951828
Alignment:
Q  239 gatgtgttcttgagtttccgaggagaagacactcgcg 275  Q
    |||||||| |||||||||||||||||||| |||||||    
T  25951864 gatgtgtttttgagtttccgaggagaagatactcgcg 25951828  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 25961115 - 25961079
Alignment:
Q  239 gatgtgttcttgagtttccgaggagaagacactcgcg 275  Q
    |||||||| |||||||||||||||||||| |||||||    
T  25961115 gatgtgtttttgagtttccgaggagaagatactcgcg 25961079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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