View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_high_58 (Length: 270)
Name: NF15978_high_58
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_high_58 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 49207751 - 49207993
Alignment:
| Q |
17 |
acctgcaatgtgcaaacagaatctgttgctgaaaatattgctccaattgctgcattcagtagaataagataaggtaagtgttcatatttgcagataagtc |
116 |
Q |
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| T |
49207751 |
acctgcaatgtgcaaacagaatctgttgctgaaaatattgctccaattgctgcattcagtagaataagataaggtaagtgttcatatttgcagataagtc |
49207850 |
T |
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| Q |
117 |
caacattaaactatgagataatcatatatatagtatatacctaaataatctccaatcttgagggaaccaatatctaatttttggaagaagtgtatggcac |
216 |
Q |
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| T |
49207851 |
caacattaaactatgagataatcatatatatagtatatacctaaataatctccaatcttgagggaaccaatatctaatttttggaagaagtgtatggcac |
49207950 |
T |
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| Q |
217 |
ctaggcaaaataataagagataataaatgagttagtattatct |
259 |
Q |
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| T |
49207951 |
ctaggaaaaataataagagataataaatgagttagtattatct |
49207993 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 36489805 - 36489759
Alignment:
| Q |
17 |
acctgcaatgtgcaaacagaatctgttgctgaaaatattgctccaat |
63 |
Q |
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| T |
36489805 |
acctgcaatgtgcaaacggaatctgttgcggcaaatattgctccaat |
36489759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 47136453 - 47136504
Alignment:
| Q |
17 |
acctgcaatgtgcaaacagaatctgttgctgaaaatattgctccaattgctg |
68 |
Q |
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| T |
47136453 |
acctgcaacgtgcacacagaatctgttgcagcaaatattgcaccaattgctg |
47136504 |
T |
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