View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_high_66 (Length: 260)
Name: NF15978_high_66
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 39077587 - 39077350
Alignment:
| Q |
16 |
catacgcaagaaacagaaacacaatagaactatctttacaaattcaaagacacaaaatttatacaagaggattaatgggaatgaagagcacaggaggaga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39077587 |
catacgcaagaaacagaaacacaatagaactatctttacaaattcaaagacacaaaatttatacaagaggattaatgggaatgaagagcacaggaggaga |
39077488 |
T |
|
| Q |
116 |
aatagttcaagttcaaggaggccacattgtaagggcaacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatcgacgcgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39077487 |
aatagttcaagttcaaggaggccacattgtaagggcgacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatcgacgtgtt |
39077388 |
T |
|
| Q |
216 |
cgattatcagcacacacagcaattcaattcgatgatgt |
253 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |
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| T |
39077387 |
cgattatcagcacacacagcaattcaattctatgatgt |
39077350 |
T |
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