View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_high_74 (Length: 242)
Name: NF15978_high_74
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_high_74 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 34660693 - 34660903
Alignment:
| Q |
14 |
catagggctccctttaggtttctcagtcctatagaatggtgaaccaaacacaaaggccacaatggacaataacatgacaattgttggtatgccaaatccc |
113 |
Q |
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| T |
34660693 |
catagggctccctttaggtttctcagtcctatagaatggtgaaccaaacacaaaggccacaatggacaataacatgacaattgttggtatgccaaatccc |
34660792 |
T |
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| Q |
114 |
caaccccaaccagtattgtcttgaatgtaaacaacaatggtcaaagcacttaaagaagctatacccatgaagaaaaaataccaattgaaaatgttccatt |
213 |
Q |
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| T |
34660793 |
caaccccaaccagtattgtcttgaatgtaaacaacaatggtcaaagcacttaaagaagctatacccatgaagaaaaaataccaattgaaaatgttccatt |
34660892 |
T |
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| Q |
214 |
ttcttgatgct |
224 |
Q |
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||||||||||| |
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| T |
34660893 |
ttcttgatgct |
34660903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 214
Target Start/End: Original strand, 34646317 - 34646440
Alignment:
| Q |
91 |
caattgttggtatgccaaatccccaaccccaaccagtattgtcttgaatgtaaacaacaatggtcaaagcacttaaagaagctatacccatgaagaaaaa |
190 |
Q |
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| T |
34646317 |
caatggttggaatcccaagtccccaaccccaacccacattgtcttgaacataaaccacaatggttaaagcacttagagaagcaaaacccatgatgaaaaa |
34646416 |
T |
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| Q |
191 |
ataccaattgaaaatgttccattt |
214 |
Q |
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| T |
34646417 |
gtaccaattgaagaggttccattt |
34646440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 34666096 - 34666202
Alignment:
| Q |
111 |
ccccaaccccaaccagtattgtcttgaatgtaaacaacaatggtcaaagcacttaaagaagctatacccatgaagaaaaaataccaattgaaaatgttcc |
210 |
Q |
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| T |
34666096 |
ccccaaccccatcccatatgatcttgaatgtaaaccacaatggtcaaagcacttaatgaagcaaatcccatgcaaaaaaagtaccaattgaagaggttcc |
34666195 |
T |
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| Q |
211 |
attttct |
217 |
Q |
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||||||| |
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| T |
34666196 |
attttct |
34666202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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