View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_high_75 (Length: 242)
Name: NF15978_high_75
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_high_75 |
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| [»] chr8 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6190898 - 6190657
Alignment:
| Q |
1 |
tgcgaaaaagagaaaagcttgtgcagctaatgagagatggtaagaaacagaagaaatcaatgatgaaagaaaagagtcagtttgaggatgaagccaagcg |
100 |
Q |
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| T |
6190898 |
tgcgaaaaagagaaaagcttgtgcagctaatgagagatggtaagaaacagaagaaatcaatgatgaaagaaaagagtcagtttgaggatgaagccaagcg |
6190799 |
T |
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| Q |
101 |
tctcgtggaagagggtgaaaaggtggaggaaaaaattagaatacttgttgagcaaaagaacagtattgagttggaaaaaatcaagttaaaggaaagcatg |
200 |
Q |
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| T |
6190798 |
tctcgtggaagagggtgaaaaggtggaggaaaaaattagaatacttgttgagcaaaagaacagtattgagttggaaaaaatcaagttaaaggaaagcatg |
6190699 |
T |
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| Q |
201 |
gaaagacacgaagatgaaaagaagaaattggaagatgaggct |
242 |
Q |
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| T |
6190698 |
gaaagacacgaagatgaaaagaagaaattggaagatgaggct |
6190657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 6183880 - 6183649
Alignment:
| Q |
11 |
agaaaagcttgtgcagctaatgagagatggtaagaaacagaagaaatcaatgatgaaagaaaagagtcagtttgaggatgaagccaagcgtctcgtggaa |
110 |
Q |
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| T |
6183880 |
agaaaagcttatgcagcgagtgacagatgctaagaaacagaaggaatcaaaacagaaagaaaagagtcagtttgaggatgaagctaagcgtgtcgaggaa |
6183781 |
T |
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| Q |
111 |
gagggtgaaaaggtggaggaaaaaattagaatacttgttgagcaaaagaacagtattgagttggaaaaaatcaagttaaaggaaagcatggaaagacacg |
210 |
Q |
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| T |
6183780 |
gaggttgaaaagacggatgaaaaaattagaatacttgtcgagcaaaagaaaattcttgagttggaaaaaacaaagttgaaggagagcatggaaaaatgtg |
6183681 |
T |
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| Q |
211 |
aagatgaaaagaagaaattggaagatgaggct |
242 |
Q |
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| T |
6183680 |
aaggtgaaaagaagaaagtggaagatgaggct |
6183649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 6134982 - 6134929
Alignment:
| Q |
7 |
aaagagaaaagcttgtgcagctaatgagagatggtaagaaacagaagaaatcaa |
60 |
Q |
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| T |
6134982 |
aaagagaaaagcttatgcagcgagtgagagatgctaataaacagaaggaatcaa |
6134929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 37454711 - 37454948
Alignment:
| Q |
5 |
aaaaagagaaaagcttgtgcagctaatgagagatggtaagaaacagaagaaatcaatgatgaaagaaaagagtcagtttgaggatgaagccaagcgtctc |
104 |
Q |
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| T |
37454711 |
aaaaagagaaaagcttgtgcaactaataagagatggtaagaaacagaagaaatcaatgaagaaagaaaagagtcggtttgaggatgaagacaagaggctc |
37454810 |
T |
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| Q |
105 |
gtggaagagggtgaaaaggtggaggaaaaaattagaatacttgttgagcaaaagaacagtattgagttggaaaaaatcaagttaaaggaaagcatggaaa |
204 |
Q |
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| T |
37454811 |
gcggaagaaggtgaaaagttggacgaaaagattagaattcttgttgagcaaaagaaaagtaatgagctgaaaagaaccaagttgaaggaaaagatggaaa |
37454910 |
T |
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| Q |
205 |
gacacgaagatgaaaagaagaaattggaagatgaggct |
242 |
Q |
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| T |
37454911 |
gatgtgaaggtgaaaagaacaaagttgaagatgaggct |
37454948 |
T |
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