View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_high_8 (Length: 516)
Name: NF15978_high_8
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_high_8 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 12 - 500
Target Start/End: Original strand, 42473077 - 42473565
Alignment:
| Q |
12 |
atgaagcacacctagaaagatatgggccattttccagcacaactttggcaaattcatcatcatattttgctgcaacctttgccattgacagaaaagcatc |
111 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473077 |
atgaagcacaactagaaagatatgggccattttccagcacaactttggcaaattcatcatcatattttgctgcaacctttgccattgacagaaaagcatc |
42473176 |
T |
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| Q |
112 |
ttggtgtcttgcttctctagtttcaccatcacgactaaaatcaacatcttgaagtgttaaattacgaacaatgtcaatcgaagtcttgagacatactcga |
211 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473177 |
ttggtgtcttgcttcgctagtttcaccatcacgactaaaatcaacatcttgaagtgttaaattacgaacaatgtcaatcgaagtcttgagacatactcga |
42473276 |
T |
|
| Q |
212 |
ttcttcttaatttgatctgatttttgcacatcaataacattctccaactcaccatatgcaactctaggaaccttggaaggttgtttttcattttcttcaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473277 |
ttcttcttaatttgatctgatttttgcacatcaataacattccccaactcaccatatgcaactctaggaaccttggaaggttgtttttcattttcttcaa |
42473376 |
T |
|
| Q |
312 |
ctttcgggttctcgagacagttttcaggtttgggtgaggaagtcaaacgttcttcatctttgtgggtaactatcctcttgnnnnnnnnntcgattttttg |
411 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42473377 |
ctttcaggttctcgagacagttttcaggtttgggtgaggaagtcaaacgttcttcatctttgtgggtaactatcctcttgaagaaagaatcgattttttg |
42473476 |
T |
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| Q |
412 |
actcttaaccattgctacttttcttaactactgaactgcataggagaacagaaaagcaaaaacattaatgtgaatacaaacaaagaatg |
500 |
Q |
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| T |
42473477 |
actcttaaccattgctacttttcttaactactgaactgcataggagaacagaaaagcaaaaacattaatgtgaatacaaacaaagaatg |
42473565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 42480607 - 42480667
Alignment:
| Q |
251 |
ttctccaactcaccatatgcaactctaggaaccttggaaggttgtttttcattttcttcaa |
311 |
Q |
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| T |
42480607 |
ttctcaaactcatcacatgcaactctacgaaccttggaaagttgcttctcattttcttcaa |
42480667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 33361908 - 33361830
Alignment:
| Q |
175 |
acgaacaatgtcaatcgaagtcttgagacatactcgattcttcttaatttgatctgatttttgcacatcaataacattc |
253 |
Q |
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| T |
33361908 |
acgaacagtgtcaattgaagtcttgagacatagtcgattattcagaatttgagtcgaactttgcacttcaataacattc |
33361830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 40770 - 40692
Alignment:
| Q |
175 |
acgaacaatgtcaatcgaagtcttgagacatactcgattcttcttaatttgatctgatttttgcacatcaataacattc |
253 |
Q |
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||||||| ||||||| |||||||||||||||| |||||| ||| ||||||| || ||||||| |||||||||||| |
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| T |
40770 |
acgaacagtgtcaattgaagtcttgagacatagtcgattattcagaatttgaatcgaactttgcacttcaataacattc |
40692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 22272137 - 22272215
Alignment:
| Q |
175 |
acgaacaatgtcaatcgaagtcttgagacatactcgattcttcttaatttgatctgatttttgcacatcaataacattc |
253 |
Q |
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| T |
22272137 |
acgaacagtgtcaattgaagtcttgagacatagtcgattattcagaatttgactcgaactttgcacttcaataacattc |
22272215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 14798957 - 14799035
Alignment:
| Q |
175 |
acgaacaatgtcaatcgaagtcttgagacatactcgattcttcttaatttgatctgatttttgcacatcaataacattc |
253 |
Q |
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||||||| ||||||| |||||||||||||||| |||||| ||| ||||||| || ||||||| |||||||||||| |
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| T |
14798957 |
acgaacagtgtcaattgaagtcttgagacatagtcgattattcagaatttgactcgaactttgcacttcaataacattc |
14799035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 2734899 - 2734821
Alignment:
| Q |
175 |
acgaacaatgtcaatcgaagtcttgagacatactcgattcttcttaatttgatctgatttttgcacatcaataacattc |
253 |
Q |
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||||||| ||||||| |||||||||||||||| |||||| ||| ||||||| || ||||||| |||||||||||| |
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| T |
2734899 |
acgaacagtgtcaattgaagtcttgagacatagtcgattattcagaatttgactcgaactttgcacttcaataacattc |
2734821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 40923945 - 40923867
Alignment:
| Q |
175 |
acgaacaatgtcaatcgaagtcttgagacatactcgattcttcttaatttgatctgatttttgcacatcaataacattc |
253 |
Q |
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||||||| ||||||| |||||||||||||||| |||||| ||| ||||||| || ||||||| |||||||||||| |
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| T |
40923945 |
acgaacagtgtcaattgaagtcttgagacatagtcgattattcagaatttgactcgaactttgcacttcaataacattc |
40923867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 27129549 - 27129471
Alignment:
| Q |
175 |
acgaacaatgtcaatcgaagtcttgagacatactcgattcttcttaatttgatctgatttttgcacatcaataacattc |
253 |
Q |
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||||||||||||||| |||| ||||||||||| |||||| ||| ||||||| || ||||||| |||||||||||| |
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| T |
27129549 |
acgaacaatgtcaattgaagccttgagacatattcgattattcagaatttgactcgaactttgcacttcaataacattc |
27129471 |
T |
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