View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_10 (Length: 515)
Name: NF15978_low_10
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 14 - 451
Target Start/End: Complemental strand, 34311834 - 34311391
Alignment:
| Q |
14 |
cagagatcgaataagagagtgttgggagaatctatgaatggtaatagtgacccttttgcattagaaggaaaattaccaacaagaataagcaagagaaatg |
113 |
Q |
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| T |
34311834 |
cagagatcggataagagagtgttgggagaatctatgaatggtaatagtgacccttttgcattagaaggaaaataaccaacaagaataagcaagagaaatg |
34311735 |
T |
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| Q |
114 |
gtacgagtaacatgttgagttgttctagcctcatgttgtgttgcttagggaagaaaatgatggagtatattttgtggtattgatgnnnnnnnnna----- |
208 |
Q |
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| T |
34311734 |
gtacgagtaacatgttgagttgttctagcctcatgttgtgttgcttagggaagaaaatgatggagtatattttgtggtattgatgttttttttttttttt |
34311635 |
T |
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| Q |
209 |
aaattgctggtatgttatatttataggttgtaaaaagctacatgcatggttcttgaagattc-tataaatgacatatggatggtaaagagtgaaatggga |
307 |
Q |
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| T |
34311634 |
aagttgctggtatgttatatttataggttgtaaaaagttgcatgcatggttcttgaagattcatataaatgacatatggatggtaaagagtgaaatggga |
34311535 |
T |
|
| Q |
308 |
gtgacataatcgtagatagattgagaatgttcgagattagtatggtgttttggagaagagaatggtggttggttctaagtgcatgaattctccaagctct |
407 |
Q |
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| T |
34311534 |
gtgacataatcgtagatagattgagaatgttcgagattagtatggtgttttggagaagagaatggtggttggttctaagtgcaagaattctccaagctct |
34311435 |
T |
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| Q |
408 |
tccagaggcttcgtgtgttataagaaagagcaatgatacattga |
451 |
Q |
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| T |
34311434 |
tccagaggcttcgtgtgttataagaatgagcaatgatacattga |
34311391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 221 - 430
Target Start/End: Original strand, 34323390 - 34323597
Alignment:
| Q |
221 |
tgttatatttataggttgtaaaaagctacatgcatggttcttgaagattctataaatgacatatggatggtaaagagtgaaatgggagtgacataatcgt |
320 |
Q |
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| T |
34323390 |
tgttgtatttataggtt-taaaatgttgcatgcataattcttgaagattctataaatgacatatggatggtagagagtgaaatggaagtgacataattgt |
34323488 |
T |
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| Q |
321 |
agatagattgagaatgttcgagattagtatggtgttttggagaagagaatggtggttggttctaagtgcatgaattctccaagctcttccagaggcttcg |
420 |
Q |
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| T |
34323489 |
cgatagatt-agaatgttctggattattatagtgttttggagaaaggaaaggtggttggttctaagtgcaagaattctccaagctcttccagagacttcg |
34323587 |
T |
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| Q |
421 |
tgtgttataa |
430 |
Q |
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| T |
34323588 |
tgtgttataa |
34323597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 34323138 - 34323273
Alignment:
| Q |
15 |
agagatcgaataagagagtgttgggagaatctatgaatggtaatagtgacccttttgcattagaaggaaaattaccaac---aagaataagcaagagaaa |
111 |
Q |
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| T |
34323138 |
agagatcggacaagagtgtgttgggtgaatccatgaatggtagcaataacccttttgcattggaaggaaaattaccaacaagaagaataatcaagagaat |
34323237 |
T |
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| Q |
112 |
tggtacgagtaacatgttgagttgttctagcctcat |
147 |
Q |
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| T |
34323238 |
tggtataagcgacatgttgagttgttgtagcctcat |
34323273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 34314242 - 34314160
Alignment:
| Q |
65 |
ccttttgcattagaaggaaaattaccaacaagaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
147 |
Q |
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| T |
34314242 |
ccttttgctttggtaggaaaaccaccagtaagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcctcat |
34314160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 34305021 - 34305074
Alignment:
| Q |
94 |
aagaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
147 |
Q |
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| T |
34305021 |
aagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcctcat |
34305074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 34317511 - 34317578
Alignment:
| Q |
80 |
ggaaaattaccaacaagaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
147 |
Q |
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| T |
34317511 |
ggaaaactaccagcaagaacaatcaagaaaaaaagtactagtaacatgttgagttgttgtagcctcat |
34317578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 33426045 - 33426001
Alignment:
| Q |
100 |
aagcaagagaaatggtacgagtaacatgttgagttgttctagcct |
144 |
Q |
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| T |
33426045 |
aagcaagaaaaatggtactggtaacatgttgagttgttgtagcct |
33426001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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