View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_12 (Length: 483)
Name: NF15978_low_12
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 5399840 - 5399380
Alignment:
| Q |
1 |
ttttcaggaacgtttcatctcacgaagctcatatctaaaacgccacctaacatccctctccgacttcacactctccccaccattaaacataacggcttca |
100 |
Q |
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| T |
5399840 |
ttttcaggaacgtttcatatcacgaagctcatatctaaaacgccacctaacatccctctccgacttcacactctccccaccattaaacataacggcttca |
5399741 |
T |
|
| Q |
101 |
acattcacaaccgttgcagaattttgttacaaccgtaaaatccatttaacaccaacaaacattgcagccgttataacggcagcagagttactaggaatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5399740 |
tcattcacaaccgttgcagaattttgttacaaccgtaaaatccatttaacaccaacaaacattgcagccgttataacgacagcagagttactaggaatga |
5399641 |
T |
|
| Q |
201 |
aagaaggtgacattaatctacgtgacgtggcagaatcttattttcaaagaattgtttgcatggaagggttaacggttcttcgttcgtgcatggctttgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399640 |
aagaaggtgacattaatctacgtgacgtggcagaatcttattttcaaagaattgtttgcatggaagggttaacggttcttcgttcgtgcatggctttgtt |
5399541 |
T |
|
| Q |
301 |
tcctgaagccgaaacgacggcgtctcttggtagtagatgtattgaagcattgatttgggaaaacgatgatgttgatgatagtgttttggatttcattgtg |
400 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399540 |
tcctgaagccgaaaccacggcgtctcttggtagtagatgtcttgaagcattgatttgggaaaacgatgatgttgatgatagtgttttggatttcattgtg |
5399441 |
T |
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| Q |
401 |
gaaatgcagctgagagattttcaaatggttgtttgttcgttgaatggaaggttggtcaacc |
461 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399440 |
gaaatgcagctgagagattttcaaatggttgtttgttcgttgaatggaaggttggtcaacc |
5399380 |
T |
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