View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_15 (Length: 445)
Name: NF15978_low_15
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 122 - 438
Target Start/End: Original strand, 15213738 - 15214045
Alignment:
| Q |
122 |
gtttacatttctttccccttgttgatacaattgacacagactttgcttttcagttatnnnnnnnnnnnnnnnnnngtggcctctcattggattattacta |
221 |
Q |
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| T |
15213738 |
gtttacattcctttccccttgttgatacaattgacacagactttgcttttcagttataaaaaaaa----------gtggtctctcattggattattacta |
15213827 |
T |
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| Q |
222 |
tagcatgaagtaccttatacggtcatacaaaattagtataattacataggaaacttaattaaatcaaatgataacaagatatggtgtggtgggtgggtgg |
321 |
Q |
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| T |
15213828 |
tagcatgaagtaccttatacggtcatacaaaatttgtataattacataggaaacttaattaaatcaaatgataacaagatatggtgtggtgggtgggtgg |
15213927 |
T |
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| Q |
322 |
ctagagcatagagatatttatttataattttcaacc-tatagtacacatttttctgaccatgcacaaacactaagaccaacataacaaacaaaaagagtc |
420 |
Q |
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| T |
15213928 |
ctagagcatggagatatttatttataattttcaaccttacagtacacatttttctgaccatgcacaaacactaagaccaacataacaaacaaaaagagtc |
15214027 |
T |
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| Q |
421 |
ccaaacatgatgatgtcc |
438 |
Q |
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| T |
15214028 |
ccaaacatgatgttgtcc |
15214045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 15213683 - 15213733
Alignment:
| Q |
23 |
tatcgatgcacgaaatttacatacaaatttaagcaacatatactcaatttc |
73 |
Q |
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| T |
15213683 |
tatcgatgcacgaaattcacatacaaatttaagcaacagatactcaatttc |
15213733 |
T |
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