View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_18 (Length: 432)
Name: NF15978_low_18
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Original strand, 40421507 - 40421906
Alignment:
| Q |
12 |
ccaataatattaaggcaaattctatgatatacctaaaattttcggtgtaccaaaaataaatttgtaccttcagaatttggtagaatcgtttcagaagcag |
111 |
Q |
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| T |
40421507 |
ccaacaatattaagacaaattctatggtatacttaaaattttcggtgtaccaaaaataaatttgtaccttcagagtttggtagaatcgtttcagaagcag |
40421606 |
T |
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| Q |
112 |
aaacaagatgaaataagggacgttcaagtgttgtgtcgggatttgatccaacgatcacagacgaagcaccatcaccaaaaagtgcttgtccaactaagga |
211 |
Q |
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| T |
40421607 |
aaacaagatgaaataatggacgttcaagtgttgtgttgggatttgatccaacgatcacagacgaagcaccatcaccaaaaagtgcttgtccaactaaaga |
40421706 |
T |
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| Q |
212 |
atccaagtgtgtttcattgggcccacgaaaagtaacaacagttatttcagaacacacgacgaggacacgtgcaccaatgttattctcagctagatctttg |
311 |
Q |
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| T |
40421707 |
atccaagtgtgtttcattgggcccacgaaaagtaacaacagttatttcagaacacacaacgaggacacgtgcaccaatgttattctcagctagatctttg |
40421806 |
T |
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| Q |
312 |
gcaagacgaagaacggttccaccagcataacaaccttggtggtataacatgaaccttttagtggatggatttagattcaagagtttgatgagttgataat |
411 |
Q |
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| T |
40421807 |
gcaagacgaagaacggttccaccagcataacaaccttggtggtataacatgaaccttttagtggatggatttagattcaagagtttgatgagttgataat |
40421906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 370
Target Start/End: Complemental strand, 5302765 - 5302671
Alignment:
| Q |
276 |
acacgtgcaccaatgttattctcagctagatctttggcaagacgaagaacggttccaccagcataacaaccttggtggtataacatgaacctttt |
370 |
Q |
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| T |
5302765 |
acacgagcacctttgttgttctcagctagatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttggtacatcatgtacctttt |
5302671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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