View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_2 (Length: 690)
Name: NF15978_low_2
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 6359318 - 6359029
Alignment:
| Q |
16 |
attaggttattggatcgagatttctgtaaagcttgaaggtatcaaacaatatatttaataacgaaataataacagtagtagatagagagaattacaagga |
115 |
Q |
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| T |
6359318 |
attaggttattggatcgagatttctgtaatgcttgaaggtatcaaacaatatatttaataacgaaataataacagtagtaaatagagagaattacaagga |
6359219 |
T |
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| Q |
116 |
cgagcttaaattcaaaatgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatac |
215 |
Q |
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| T |
6359218 |
cgagcttaaattcaaaacgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatac |
6359119 |
T |
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| Q |
216 |
tcaaggatctgacttcatcgacataaactgtaaatcaatttcatttgtacatggatcaaagaatatacagaaagggtaagacataaaaag |
305 |
Q |
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| T |
6359118 |
tcaaggatctgacttcatcgacataaactgtaaatcaatttcatttgtacatggatcaaagaatatacagaaagggtaagacataaaaag |
6359029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 346 - 655
Target Start/End: Complemental strand, 6359020 - 6358705
Alignment:
| Q |
346 |
gcaggtacaagttatagtcagaaatgttaaatgatattgttactagaagaaggattagaagcttcttttgaaagtgattttattccggttgaaatttgct |
445 |
Q |
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| T |
6359020 |
gcaggtacaagttatagtcagaaatgttaaatgatattgttactagaagaaggattagaagcttcttttgaaagtgattttattccggttgaaatttgct |
6358921 |
T |
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| Q |
446 |
ttatctgttccttgtacctaactaacccacattcttggcattggaatgattttccatcttcagtttagacagatcaag------nnnnnnnnnnnnncaa |
539 |
Q |
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| T |
6358920 |
ttatctattccttgtacctaactaacccacattcttggcattggaatgattttccatcttcagtttagacagatcaagaagaaaaaaaaaaaaaaaaaaa |
6358821 |
T |
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| Q |
540 |
aggtctcgaatccaagttttgctgagtatgcataaataatctttgaatgacatttcttgctctataagtgaacttattattgcaaatggtaacttctact |
639 |
Q |
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| T |
6358820 |
aggtctcgaatccaagttttgctgagtatgcataaataatctttgaatgacatttcttgctctataagtgaacttattattgcaaatggtaacttctact |
6358721 |
T |
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| Q |
640 |
tagacgagataaaaaa |
655 |
Q |
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| T |
6358720 |
tagacgagataaaaaa |
6358705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 158 - 505
Target Start/End: Original strand, 32857285 - 32857631
Alignment:
| Q |
158 |
tttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatactcaaggatctgacttcatcgacataaactgtaaatcaatttc |
257 |
Q |
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||||||||||||||||| |||||| ||||| |||||||| ||| ||||| |||||| |||||||| ||||||||| || |||||| | ||||||||||| |
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| T |
32857285 |
tttgcagtttctcaatcattttatggatggaaatagcttcatgagaatctacatatagtcaaggatttgacttcatggatataaacagcaaatcaatttc |
32857384 |
T |
|
| Q |
258 |
atttgtacatggatcaaagaatatacagaaagggtaagacataaaaa-gattggaatgcaaaagtaaaatagtttatgtgctaggaactgcaggtacaag |
356 |
Q |
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||||||||| |||||| | | | || ||| | ||||| | ||||| |||| |||||||||||||||||| | | | ||| || | ||| ||||| |
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| T |
32857385 |
atttgtacacagatcaagg--tttccataaaagataagaaagaaaaaagatttaaatgcaaaagtaaaatagatcagggaatagcaattacagtaacaag |
32857482 |
T |
|
| Q |
357 |
ttatagtcagaaatgttaaatgatattgttactagaagaaggattagaagcttcttttgaaagtgattttattccggttgaaatttgctttatctgttcc |
456 |
Q |
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|| ||||||||||||||||| |||| || | | |||||||| ||||||||||||| | | || |||||||| | |||| |||||||||||||| |||| |
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| T |
32857483 |
ttctagtcagaaatgttaaaggatactgccattggaagaaggcttagaagcttcttctaatagaaattttatttcagttgcaatttgctttatctcttcc |
32857582 |
T |
|
| Q |
457 |
ttgtacctaactaacccacattcttggcattggaatgattttccatctt |
505 |
Q |
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|||| |||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
32857583 |
ttgtctctaactaacccacattcttggcattgaaatgcttttccatctt |
32857631 |
T |
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