View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_20 (Length: 418)
Name: NF15978_low_20
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 26016656 - 26016283
Alignment:
| Q |
20 |
gaccgaatatttgtagggctgttatttgggataggttaagataaattagctacgtacttacgttggttcacaatagtttggccggttttctagaattttg |
119 |
Q |
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| T |
26016656 |
gaccgaatatttgtagggctgttatttgggataggttaagataaattagctacgtacttacgttggttcacaatagtttggccggttttctagaattttg |
26016557 |
T |
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| Q |
120 |
gattggaattagcataaccccacaaccatgctggactcattctttgttttgtggaag-----nnnnnnnnnnngttgcacgggacatttccaaatagtta |
214 |
Q |
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| T |
26016556 |
gattggaattagcataaccccacaatcatgctggactcattctttgttttgtggaagaaaaaaaaaaaaaaaagttgcacgggacattaccaaatagtta |
26016457 |
T |
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| Q |
215 |
aaatatggagatgttagactaagattgcttgtcggaaagagtttatgtagtagacaatctcgactgttactgtcagaccagacgatttatattacatagt |
314 |
Q |
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| T |
26016456 |
aaatatggagatgttagactaag--------------------catgtagtagacaatctcgaccgttacggtcagaccagacgatttatattacatagt |
26016377 |
T |
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| Q |
315 |
taaaaaattaactatgaacaatctcgaccatccatttaagatttgataagnnnnnnnttgttattgcatcctgttgttacacaaagaaattcat |
408 |
Q |
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| T |
26016376 |
taaaaaattaactatgaacaatctcgaccatccatttaagatttgataagaaaaaaattgttattgcgtccttttgttacacaaagaaattcat |
26016283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 26019687 - 26019824
Alignment:
| Q |
20 |
gaccgaatatttgtagggctgttatttgggataggttaagataaattagctacgtacttac---gttggttcacaatagtttggccggttttctagaatt |
116 |
Q |
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| T |
26019687 |
gaccgaatatttgtggggctgttatttcggatgggttaagataaattagctacgtccttacgttgttggttcacaatggtttggccaggtttctagaatt |
26019786 |
T |
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| Q |
117 |
ttggattggaattagcataaccccacaaccatgctgga |
154 |
Q |
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| T |
26019787 |
ttcgattggaattagcacaacaccataaccatgctgga |
26019824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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