View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_23 (Length: 396)
Name: NF15978_low_23
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 35042380 - 35042749
Alignment:
| Q |
19 |
catgtggcactcacctgacttccatccaaaagaggagtgtcgttgacattatcagtacatctttctaacaacatgtttctgagatgggatacttccttca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35042380 |
catgtggcactcacctgacttccatccaaaagaggagtgtcgttgacattatcagtacatctttctaacaacatgtttctgagatgggatacttccttca |
35042479 |
T |
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| Q |
119 |
taaggtcttgggcaacctcttcggcatctagcagctgatttctagaaaattcaaatgctctttctgcatgaaggcgaaaagaaacacagttcaaacatgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35042480 |
taaggtcttgggcaacctcttcggcatctagcagctgatttctagaaaattcaaatgctctttctgcatgaaggcgaaaagaaacacagttcaaacatgt |
35042579 |
T |
|
| Q |
219 |
gcaaagccctctgcatcctcttgggttttttctcaaaattccttttcgggaactaacggcaagggcatcatgttgatctgtgactttcattttggacaag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35042580 |
gcaaagccctctgcatcctcttgggttttttctcaaaattccttttcgggaactaacggcaagggcatcatgttgatctctgactttcattttggacaag |
35042679 |
T |
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| Q |
319 |
ctccgacaacatccaggtgtttcaggtgatttctctccgttggacaaggcaggtgaacctacttcatctc |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35042680 |
ctccgacaacatccaggtgtttcaggtgatttctctccgttggacaaggcaggtgaacctacttcttctc |
35042749 |
T |
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