View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_24 (Length: 395)
Name: NF15978_low_24
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 36373864 - 36373507
Alignment:
| Q |
19 |
attttctacctcatcaccgctttccaatacgttttctttctcctgctcaaactgtctttcttcactgatagttggatcttcttcagttggtaggctatca |
118 |
Q |
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| T |
36373864 |
attttctacctcatcacctttttccgatacgttttctttctcctgctcaaactgtctttcttcactgatagttggatcttcttcagttggtaggctatca |
36373765 |
T |
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| Q |
119 |
aaattatccatgtaagcatcgattaattcctcacaggcatcagcatttaacgttctaccgtctttatgatcctgttcttcatgatcatcgatactgtttg |
218 |
Q |
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| T |
36373764 |
aaattatccatgtaagcatcgattacttcctcacaggcatcagcatttaacattctaccgcctttatgatcctgttcttcatgatcatcgatactgtttg |
36373665 |
T |
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| Q |
219 |
tcgttttcctttgaacaccttctttggattgtatagcttcccataaagttattaaacgcatatgctccttacacaaccgccttctcttaagcttctttgt |
318 |
Q |
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| T |
36373664 |
tcgttttcttttgaacaccttctttggattgtatcgcttcccataaagttatcaaatccataagctccttacacaaccgccttctcttaaacttctttgt |
36373565 |
T |
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| Q |
319 |
gcagaaattattaacatgtcccgaagaaacattataaccaccttcttcatcacatgat |
376 |
Q |
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| T |
36373564 |
gcagaaattattaacatgtcccgaagaaacattataaccaccttcttcatcacatgat |
36373507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 202
Target Start/End: Original strand, 32251706 - 32251813
Alignment:
| Q |
95 |
tcttcttcagttggtaggctatcaaaattatccatgtaagcatcgattaattcctcacaggcatcagcatttaacgttctaccgtctttatgatcctgtt |
194 |
Q |
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||||||||||||||||| ||||| ||||| | ||||||| ||| |||| ||||| | |||||||||||| || ||||||||| |||||||||| |||| |
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| T |
32251706 |
tcttcttcagttggtagactatcgaaattcttcatgtaactatctattatttccttgcgggcatcagcattgaatgttctaccgcctttatgatcttgtt |
32251805 |
T |
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| Q |
195 |
cttcatga |
202 |
Q |
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|||||||| |
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| T |
32251806 |
cttcatga |
32251813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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