View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15978_low_27 (Length: 374)

Name: NF15978_low_27
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15978_low_27
NF15978_low_27
[»] chr4 (2 HSPs)
chr4 (5-359)||(46012580-46012934)
chr4 (5-40)||(46019197-46019232)
[»] chr5 (6 HSPs)
chr5 (161-277)||(10859890-10860006)
chr5 (217-262)||(17862479-17862524)
chr5 (233-268)||(7328700-7328735)
chr5 (239-277)||(7667605-7667643)
chr5 (244-278)||(36927734-36927768)
chr5 (231-277)||(38592200-38592246)
[»] chr1 (1 HSPs)
chr1 (165-258)||(18325179-18325272)
[»] chr2 (4 HSPs)
chr2 (184-268)||(6925630-6925714)
chr2 (161-268)||(43717242-43717348)
chr2 (239-268)||(33502909-33502938)
chr2 (161-193)||(37649627-37649659)
[»] scaffold0036 (1 HSPs)
scaffold0036 (217-268)||(1008-1059)
[»] chr7 (1 HSPs)
chr7 (167-248)||(45369068-45369149)
[»] chr6 (1 HSPs)
chr6 (161-193)||(19601717-19601749)


Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 5 - 359
Target Start/End: Complemental strand, 46012934 - 46012580
Alignment:
Q  5 ctgtcacatgcctttggagagatttgggttgatatactttcatgtgaactggaaaagttcttttggattttgaatcgttcttttcaaatatctaaccaga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46012934 ctgtcacatgcctttggagagatttgggttgatatactttcatgtgaactggaaaagttcttttggattttgaatcgttcttttcaaatatctaaccaga 46012835  T
Q  105 tgttgctatattagacgcttatagagattcgaagctatatacaacacagaatttgcttggttccacttttgaaggagtcaaaattgatttaagatgtgca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46012834 tgttgctatattagacgcttatagagattcgaagctatatacaacacagaatttgcttggttccacttttgaaggagtcaaaattgatttaagatgtgta 46012735  T
Q  205 gaactaatttccacatatttgaatattctcaagtagaattgattctaacttgaagctagaatttacagcttttacaaaaccaagttaatttatcaatctg 304  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46012734 gaactaatttccgcatatttgaatattctcaagtagaattgattctaacttgaagctagaatttacagcttttacaaaaccaagttaatttatcattctg 46012635  T
Q  305 atttggatatcatctttgattttagacagtggcagatgctgcacaacaaacaacc 359  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46012634 attcggatatcatctttgattttagacagtggcagatgctgcacaacaaacaacc 46012580  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 46019232 - 46019197
Alignment:
Q  5 ctgtcacatgcctttggagagatttgggttgatata 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  46019232 ctgtcacatgcctttggagagatttgggttgatata 46019197  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 10860006 - 10859890
Alignment:
Q  161 ttggttccacttttgaaggagtcaaaattgatttaagatgtgcagaactaatttccacatatttgaatattctcaagtagaattgattctaacttgaagc 260  Q
    ||||||||||||||| | ||| ||||||| |||  ||| ||| |||| | ||||  || | ||||||| |||||  ||||||||||||||||||||||||    
T  10860006 ttggttccacttttggaagaggcaaaattcattatagaggtgtagaaatgattttgacctgtttgaatgttctcgggtagaattgattctaacttgaagc 10859907  T
Q  261 tagaatttacagctttt 277  Q
    ||||||||  |||||||    
T  10859906 tagaatttggagctttt 10859890  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 17862479 - 17862524
Alignment:
Q  217 acatatttgaatattctcaagtagaattgattctaacttgaagcta 262  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||    
T  17862479 acatatttgaatgttctcaagtagaattgattttaacttgaagcta 17862524  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 7328735 - 7328700
Alignment:
Q  233 tcaagtagaattgattctaacttgaagctagaattt 268  Q
    |||| |||||||||||||||||||||||||||||||    
T  7328735 tcaaatagaattgattctaacttgaagctagaattt 7328700  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 277
Target Start/End: Original strand, 7667605 - 7667643
Alignment:
Q  239 agaattgattctaacttgaagctagaatttacagctttt 277  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  7667605 agaattgattctaacttgaagctagaatttggagctttt 7667643  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 278
Target Start/End: Original strand, 36927734 - 36927768
Alignment:
Q  244 tgattctaacttgaagctagaatttacagctttta 278  Q
    |||||||||||||||||||||||||| ||||||||    
T  36927734 tgattctaacttgaagctagaatttagagctttta 36927768  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 38592200 - 38592246
Alignment:
Q  231 tctcaagtagaattgattctaacttgaagctagaatttacagctttt 277  Q
    |||||||||||||||||||||| ||||||| |||||||  |||||||    
T  38592200 tctcaagtagaattgattctaatttgaagccagaatttgtagctttt 38592246  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 18325272 - 18325179
Alignment:
Q  165 ttccacttttgaaggagtcaaaattgatttaagatgtgcagaactaatttccacatatttgaatattctcaagtagaattgattctaacttgaa 258  Q
    ||||||||||| ||||| ||||| |||||  ||||||| |||| | ||||  |||| |||| || ||||| ||||||||||||| |||||||||    
T  18325272 ttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttaacttgaa 18325179  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 6925630 - 6925714
Alignment:
Q  184 aaaattgatttaagatgtgcagaactaatttccacatatttgaatattctcaagtagaattgattctaacttgaagctagaattt 268  Q
    ||||||||||||| ||||  | || ||||||  |||| |||| |||||||  ||||||||||||||| |||||||| ||||||||    
T  6925630 aaaattgatttaaaatgtataaaattaattttgacatgtttgtatattcttgagtagaattgattcttacttgaagttagaattt 6925714  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 268
Target Start/End: Original strand, 43717242 - 43717348
Alignment:
Q  161 ttggttccacttttgaaggagtcaaaattgatttaagatgtgcagaactaatttccacatatttgaatattctcaagtagaattgattctaacttgaagc 260  Q
    |||||| |||||||| ||| || ||||||||||  ||||||| |||| | ||||  |||| |||| |||||    |||||||||||||||| ||||||||    
T  43717242 ttggtttcacttttggaggtgttaaaattgattctagatgtgtagaattgattttgacatgtttggatattgattagtagaattgattcta-cttgaagc 43717340  T
Q  261 tagaattt 268  Q
    ||||||||    
T  43717341 tagaattt 43717348  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 33502938 - 33502909
Alignment:
Q  239 agaattgattctaacttgaagctagaattt 268  Q
    ||||||||||||||||||||||||||||||    
T  33502938 agaattgattctaacttgaagctagaattt 33502909  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 37649659 - 37649627
Alignment:
Q  161 ttggttccacttttgaaggagtcaaaattgatt 193  Q
    ||||||||||||||| |||||||||||||||||    
T  37649659 ttggttccacttttggaggagtcaaaattgatt 37649627  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 1059 - 1008
Alignment:
Q  217 acatatttgaatattctcaagtagaattgattctaacttgaagctagaattt 268  Q
    |||| |||| ||||||| ||||| |||||||||||||| |||||||||||||    
T  1059 acatgtttggatattcttaagtataattgattctaactagaagctagaattt 1008  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 45369068 - 45369149
Alignment:
Q  167 ccacttttgaaggagtcaaaattgatttaagatgtgcagaactaatttccacatatttgaatattctcaagtagaattgatt 248  Q
    ||||||||||||||| |||||||||||| ||| ||| |||  | ||||  | || |||| || |||||||||||||||||||    
T  45369068 ccacttttgaaggagacaaaattgatttcagaggtgtagatttgattttgagatgtttggatgttctcaagtagaattgatt 45369149  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 19601717 - 19601749
Alignment:
Q  161 ttggttccacttttgaaggagtcaaaattgatt 193  Q
    ||||||||||||||| |||||||||||||||||    
T  19601717 ttggttccacttttggaggagtcaaaattgatt 19601749  T

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