View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15978_low_28 (Length: 372)
Name: NF15978_low_28
Description: NF15978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15978_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 45440773 - 45440429
Alignment:
| Q |
18 |
gtatcatcattgaagccgggagtgttttttatgttataataacgcagttagttatgttctctacttagcttatttgtgtttgctatgattaggagaatgg |
117 |
Q |
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| T |
45440773 |
gtatcatcattgaagccgggagtgttttttatgttataataacgcagttagttatgttgtctacttagctgatttgtgtttgctatgattaggagaatgg |
45440674 |
T |
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| Q |
118 |
gaagcagacaatcctgcagctagggagggtaggaaaatctaattttgttatggactacaggtatcaattcaaaattttcttgttttattgaccttaatgt |
217 |
Q |
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| T |
45440673 |
gaagcagacaatcctgcagctagggagggtaggaaaatctaattttgttatggactacaggtatcaattcaaaattttcttgttttattgaccttaatgt |
45440574 |
T |
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| Q |
218 |
tttttgacgatgcggggtttcatagctagtaccatttcctctgtcaatctgcagatatcctttgactggttaccaggcgttttgcatatgtttggcttcc |
317 |
Q |
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| T |
45440573 |
tttttgaggatgcggggtttcatagctagtaccatttcctctgtcaatctgcagatatcctttgactggttaccaggcgttttgcatatgtttggcttcc |
45440474 |
T |
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| Q |
318 |
attgatgcaaagctttgttgcatagtgtagcggcaaatctctctg |
362 |
Q |
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| T |
45440473 |
attgatgcaaagctttgttgcatagtgtagcggcaaatctctctg |
45440429 |
T |
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